CF832598

Overview
NameCF832598
Unique NameCF832598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 43/97 (44.33%), Postives = 56/97 (57.73%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A     P      P  A   A+  AGL AS ID +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.495e-13
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  569 PSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 799
            P  A  KA+ +AGL    I   E+NEAF+  +I   K LGL     + VN HGGA++LGHPLGCSGARI  TLL V+R +
Sbjct:  288 PVPATQKALKSAGLAIDDIQTVELNEAFAAQSIPVLKDLGLRERMDDAVNLHGGAIALGHPLGCSGARICTTLLNVMRQQ 367          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.240e-12
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -1
Query:  575 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA---NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 850
            +R  A A   P      P  +  KA+  AGL    I + E+NEAF+  A+    + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  271 VRAMALAGVDPAIMGYGPVPSTQKALKRAGLTMDDISHVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: YQEF_ECOLI (Probable acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=yqeF PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -1
Query:  587 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 850
            IR FA     P     AP  A  + +   G + +++D  E NEAF+  A++  K+L  D  +VN +GGA++LGHP+G SG RILV+L+
Sbjct:  275 IRAFASVGVDPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFAAQALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLV 362          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL  S I  +E+NEAF+   +   K LGL     E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAF---SVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            IR  A A   P      P  A  KA+  AG+    ID  E+NEAF   S+  +   KL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 IRSMAVAGCDPSIMGYGPVPATEKALKRAGVSIDDIDVVELNEAFAAQSLPVLKGLKLFDKMEEKVNLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CF832598 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.620e-12
Identity = 41/97 (42.27%), Postives = 57/97 (58.76%), Query Frame = -1
Query:  569 IRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFS---VVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 850
            +R  A     P      P  A   A+  AGL AS ID +E+NEAF+   +  I +  L+G   E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  267 VRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMGQIDEKINLNGGAIALGHPLGCSGARISTTLINLMEGK 363          
The following BLAST results are available for this feature:
BLAST of CF832598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
FADA_SALTY9.495e-1344.333-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI9.495e-1344.333-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADA_SALPA9.495e-1344.333-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADA_SALCH9.495e-1344.333-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADA_CHRSD9.495e-1351.253-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
FADA_PSEU51.240e-1244.213-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
YQEF_ECOLI1.620e-1240.91Probable acetyl-CoA acetyltransferase OS=Escherich... [more]
FADA_SHIDS1.620e-1243.303-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_IDILO1.620e-1243.303-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_ENTCL1.620e-1242.273-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832598 ID=CF832598; Name=CF832598; organism=Citrus sinensis; type=EST; length=850bp
CCTTTTTTTTTTTTTTTTGACCACACAAAAGGCCATATAAAGGTGTTTCA
CTGGATTTGCTCTGACAGCAGCACAAGTCTAACAACATACCAATATTGCT
TGCTACAGTCAGCCAAGCGTCATTCACATAAGATCAAGTCATAAGAGAAG
CAGTGGTCTTATTTTAGTGATCTTCACTCTTCACATATTTCTCTAGCTCA
AGCTATATGATGAGCTACAGGGATTGGTGCTCCTTCGCCACCAATGCTTT
ACCACTTTACAATGGTATGATGACTTATGCGGGTAATCATTTAATACATC
TATCCTATCTACCTTTCTTACTAGGGTCGATCAAGCTGATACATTTCCCT
TTTTATTTATTTTTTTTCTCTTTTAGCTTTCTCATTCAAGTAGACAACTT
AACAAAGAGATAAGAGACAATAGCACAGGAGGTGATGTTCCACAGTCAGT
ATACATCATCAATTCATAGCTTGGAATGTCCCACCCGCACCGCTTGCATG
AGCTCAAGAACAAGAGCGGATGCCCCCCCTCCACCATTGCAGATGCCACC
AACGCCGTACTTCCCCTTCTTATGTCTCAGTACCCCCAATAATGTGACTA
AGATACGAGCTCCACTACACCCTAACGGATGACCCAGGGATACGGCTCCA
CCATGCGCATTAACCTGTTCAGGATCAAGACCAAGCAGTTTTTGATTGGC
AATAGCTACAACAGAAAAAGCTTCGTTTATTTCATAGTAATCAATCTGAG
AAGCTTCCAAGCCAGCATTTGCTATGGCTTTTGGTATTGCAAGGGATGGA
GCAGTTGTAAACCACTCTGGAGCCTGAGCTGCGTCAGCAAATCCCCTAAT
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