CF832599

Overview
NameCF832599
Unique NameCF832599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 1
Query:   97 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSANLGQAP--ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLF 690
            S+  RD+ +V   RT M     G+  +V A  L +  ++    R AN+ P  V +V +G V +  L Q+   AR AA+  GIP +V   T+N++C S M A+ +A  +I+ G+ D  + GG+E M + P           + H   VD       +       MG+ AE+    H + R+EQD++ +RS +R  AA  +G F
Sbjct:    2 SLNPRDIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP-----------MTHG--VDVNPAASKYAAKAAMMMGLTAELLGKMHGVGREEQDAFGVRSHQRAQAANENGYF 189          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.039e-17
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: THL_CLODI (Acetyl-CoA acetyltransferase (Fragment) OS=Clostridium difficile GN=thi PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  109 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKA 387
            R+V I   ART +G F G+  SVSA +LG  A + A+KRAN+ P ++ E   G VL+A LGQ  ARQ ALGAGIP      TIN VC SG+++
Sbjct:    2 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRS 94          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P                   GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANKVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 63/200 (31.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 62/199 (31.16%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  106 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            A DV +V   RTP+G    G     +  +L S  +   L+   +KP  + ++  GNVL    G   AR A   +GIP +V  + +N+ CSSG++AV   A  I+ G  DI +A G+ESMS     L+       +    +     +D L        MG+ +E  A +  I+R +QD++A+ S ++  +AQ+ G F  E
Sbjct:   35 ASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS-----LSNRGNPGNISSRLLESDKARDCL------IPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAE 222          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  109 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWE 699
            +   IV   RTPMG    G   +V A  L +  ++  L R   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P                   GM             MG+ AE+    H I+R++QD++A+RS +R  AA   G FA E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALLIRNPQLDPSLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANRVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAVRSHQRAHAATVEGRFAKE 188          
BLAST of CF832599 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 60/196 (30.61%), Postives = 100/196 (51.02%), Query Frame = 1
Query:  106 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLF 690
            A DV +V   RTP+G    G     +  +L S  +   L+   +KP  + ++  GNVL    G   AR A   +GIP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESM+     L++      +    + +   +D L        MG+ +E  A +  ++R +QD++A+ S ++  +AQ+ G F
Sbjct:   35 ASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT-----LSQRGNHGNISSRLLENEKARDCL------IPMGITSENVAERFGVSRQKQDAFALASQQKAASAQSRGCF 219          
The following BLAST results are available for this feature:
BLAST of CF832599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
FADA_CHRSD4.624e-1731.193-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
FADA_SHESW6.039e-1732.003-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC6.039e-1732.003-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB86.039e-1732.003-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
THL_CLODI7.887e-1750.54Acetyl-CoA acetyltransferase (Fragment) OS=Clostri... [more]
FADA_SHEB51.030e-1632.003-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_SHEON1.345e-1631.503-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
THIKA_RAT1.757e-1631.163-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
FADA_SHEDO1.757e-1632.003-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
THIKB_MOUSE2.295e-1630.613-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832599 ID=CF832599; Name=CF832599; organism=Citrus sinensis; type=EST; length=700bp
CGGTAACTAATAAGCAAAACTCGTCTCTCTTTCAAGTTTAAAGTTAAAGA
TTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAACCTTCAGAATCTA
TCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGTACACCAATGGGA
GGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAAGCTGGGTTCCAT
TGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAACCACTCCTTGTGC
AAGAAGTCTTCTTTGGGAACGTTCTTAGCGCCAATTTAGGACAGGCTCCC
GCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTCTGTCGTATGCAC
CACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTGTAATGCTTGCTG
CACAGAGTATTCAATTGGGTATCAATGATATTGTTGTTGCGGGTGGCATG
GAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGCAAGAAAGGGATC
TCGACTGGGACATGATACTATTGTTGATGGCATGCTCAAAGATGGCCTGT
GGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCAGAAATATGTGCT
AATAAACATACCATAACAAGGGATGAGCAGGATTCATATGCTATTAGAAG
CTTTAAGCGTGGGATTGCTGCACAAAATTCTGGTCTCTTTGCTTGGGAAA
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