CF832603

Overview
NameCF832603
Unique NameCF832603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6299 contig Csv1_Contig6299:495..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.380e-38
Identity = 76/145 (52.41%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:   87 SHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.016e-38
Identity = 74/145 (51.03%), Postives = 109/145 (75.17%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL    EL E NA+GV+ AA+R+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+++E+L+KA +GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH+L
Sbjct:   87 SHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYKAQSDGIWGEHEVDYILFLRKNVTLNPDPNEIKSYCYVSKEEVREILKKAASGE--IKLTPWFKIIADTFLFKWWDNLNH--LSPFVDHEKIHRL 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 8.946e-38
Identity = 75/145 (51.72%), Postives = 106/145 (73.10%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL   SEL E +A+GVR AAQR+L  ELGI  E+VP +E   L RI YKA SD  WGEHE+DY+L + ++V++NP+P+E+  Y YV +E+L+EL+ KA  GE  +K++PWF+++ D FLFKWWD+L +  LN  +D + IH++
Sbjct:   87 SHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYKAQSDSIWGEHEIDYILLVKKNVTLNPDPNEIKSYCYVTKEELEELIGKAAHGE--IKITPWFQIIADTFLFKWWDNLNR--LNLFVDHEKIHRM 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.168e-37
Identity = 74/145 (51.03%), Postives = 107/145 (73.79%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL    EL E +A+GV+ AAQR+L  ELGI  E+V ++E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  Y YV++E+LKE+L+K   GE  +KL+PWF+++ D FLFKWWD+L    L+  +D + IH++
Sbjct:   87 SHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYKAQSDGIWGEHEIDYILFLRKNVTLNPDPNEIKSYCYVSKEELKEILKKEARGE--IKLTPWFKIIADAFLFKWWDNLNH--LSPFVDHEKIHRM 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.884e-28
Identity = 66/151 (43.71%), Postives = 89/151 (58.94%), Query Frame = -1
Query:  304 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHL-----EKGTLNEVIDMKTIHKLT 741
            SHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y APSDG WGEHE+DY+LF         NP+EV++ +YV + +L+ +       +E    +PWF+L+  +FLF WWD L     EKG     +D K++  L+
Sbjct:  103 SHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHYLAPSDGLWGEHEIDYILFSTTPTEHTGNPNEVSDTRYVTKPELQAMFE-----DESNSFTPWFKLIARDFLFGWWDQLLARRNEKGE----VDAKSLEDLS 244          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.426e-28
Identity = 60/145 (41.38%), Postives = 95/145 (65.52%), Query Frame = -1
Query:  307 SHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++   +    +KA SD  WGEHE+ YLL + ++V++NP+P E     Y+++E+L ELL +   GE  +K++PW R + + FL++WW HL+  T    +++  IH++
Sbjct:   87 SHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSILYLSQEELWELLEREARGE--VKVTPWLRTIAERFLYRWWPHLDDVT--PFVELHKIHRV 227          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.096e-27
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  352 SHPLYRESE---LIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWW---DHLEK 741
            SHPL    E    + E   GV+NAAQRKL  ELGI A+ +P D+F  L RI Y APS G WGEHE+DY+LF    V ++ NP+EV  YKYV  E+LKE+      G      +PWF+L+ ++F+FKWW   DH  K
Sbjct:   88 SHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYG-----FTPWFKLICEHFMFKWWQDVDHASK 218          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.432e-27
Identity = 66/149 (44.30%), Postives = 104/149 (69.80%), Query Frame = -1
Query:  310 SHPLYRE-SELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPS--DGKWGEHELDYLLFIVRD-VSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVID-MKTIHK 741
            SHPL+   SEL+EENA GV+ AA+RKL  ELG+  + V +D+FT + +I YK+ S  D +WGEHE+D++L + +D +++N  P+EV +YKYV++E+L +L +  D G+  +K++PWFRL+  N L  WW++L    L  +++   TIH+
Sbjct:   94 SHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYKSESKEDPQWGEHEIDHILIMQKDGITINAEPNEVMDYKYVSQEELDQLFKDEDEGK--VKVTPWFRLIALNHLKPWWNNL--NNLKPLVEPTNTIHR 238          
BLAST of CF832603 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 58/155 (37.42%), Postives = 91/155 (58.71%), Query Frame = -1
Query:  307 SHPLYRESEL-----IEENALGVRNAAQRKLLDELGICAEDVPV-DEFTPLGRILYKAPSDGKWGEHELDYLLF----IVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 741
            SHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y APS+  WGEHE+DY+LF       +++VNPN +EV ++K+V+   LK +       +   K +PWF+++ +N+LF WW+ L+   L+EV + + IH++
Sbjct:  140 SHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHYMAPSNEPWGEHEIDYILFYKINAKENLTVNPNVNEVRDFKWVSPNDLKTMF-----ADPSYKFTPWFKIICENYLFNWWEQLD--DLSEVENDRQIHRM 287          
The following BLAST results are available for this feature:
BLAST of CF832603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI1_HUMAN1.380e-3852.41Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]
IDI1_MOUSE4.016e-3851.03Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_BOVIN8.946e-3851.72Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_RAT1.168e-3751.03Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_PHARH2.884e-2843.71Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI2_HUMAN6.426e-2841.38Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_SCHPO1.096e-2748.53Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI_DICDI1.432e-2744.30Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST2.615e-2137.42Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02B24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832603 ID=CF832603; Name=CF832603; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTATAGAAGAAGCAGATTTTTATTTTTTTACCATCCA
TATGTAATGTCAAAATTACAAACTTAACAATAAAATTCCATAAAAGCAGC
ACATACGAAAAGATAAGGTAACGTCAACAACAAAATGCTAATCTGTGTAG
AACTCTCGCATATCCAAATTTATTGGAATAAAGAAACCGGTGAGAAGATA
CTGTGTACCCTTAATGTCTTGAAGAACTCTCAAATGCCCAAACTTATTGG
AATACAGGTTCCGGCACACAAATACTGTGTTTCAAGGGCCTGCGGCTTTA
TTAAGTCAACTTGTGAATGGTCTTCATGTCAATGACTTCGTTAAGGGTAC
CTTTTTCGAGGTGATCCCACCACTTGAACAAGAAATTGTCCACAACCAGT
CTGAACCAAGGAGACAGCTTCAAACCTTCTTCTCCAGCATCTGCTTTCCT
CAAAAGCTCTTTTAACTGTTCCCGGTTGACATATTTATACTCGGCTACTT
CATCAGGATTTGGGTTAACACTAACATCTCGGACAATGAAAAGTAAGTAG
TCAAGTTCATGCTCCCCCCACTTGCCATCAGAAGGGGCCTTGTACAGAAT
GCGACCCAGTGGAGTGAACTCATCAACTGGCACATCTTCAGCACAAATGC
CCAGCTCATCCAAAAGCTTTCTTTGTGCAGCATTCCTCACCCCAAGAGCG
TTCTCCTCAATAAGCTCAGATTCACGGTACAGAGGATGGCT
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