CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CYAPA (50S ribosomal protein L22, cyanelle OS=Cyanophora paradoxa GN=rpl22 PE=3 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 7.076e-27
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = -3
Query:  124 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 456
            EV A A+Y+  S  KVRR++DQIRG+SY+E +M+L +MPY+AC  I K++ SAAAN     GFN+  L+I+K  V++  + KR RP+AQGR + I +PTCHITV ++D SL
Sbjct:    4 EVKAIAKYVRTSPQKVRRILDQIRGKSYKEAVMLLSVMPYKACSIILKIVDSAAANAQVTKGFNKNKLIISKTFVDKGPTLKRFRPRAQGRGYKILKPTCHITVQVQDQSL 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNJA (50S ribosomal protein L22 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplV PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.207e-26
Identity = 55/107 (51.40%), Postives = 78/107 (72.90%), Query Frame = -3
Query:  136 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 456
            E+ A ARY+ MS +KVRRV++QIRGR+Y + L++LE MPY AC P+ K++ SA AN  HN G +   LVI+KA  ++  + KR RP+AQGR + I++ TCHIT+ +R
Sbjct:    7 EIKAVARYIRMSPYKVRRVLNQIRGRTYADALILLEFMPYAACEPVRKVLRSAVANAEHNNGLDPRDLVISKAYADQGPTLKRFRPRAQGRAYPIRKRTCHITIAVR 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CUSGR (50S ribosomal protein L22, plastid OS=Cuscuta gronovii GN=rpl22 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.207e-26
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  127 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 462
            K E    ++   +SA K RRVID+IRGRSYEETL+ILEL+PYRA YPIFK +  AA+N        + +L I+KAEVNE  + K+ +P+A+GR + IK+ TCHIT+VL D+S
Sbjct:    6 KPETYVFSQNFPISADKARRVIDRIRGRSYEETLVILELLPYRAAYPIFKFVCFAASNASSTSTSKKENLFISKAEVNERPAIKKLKPRARGRSYPIKKATCHITIVLTDLS 117          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_BRADI (50S ribosomal protein L22, chloroplastic OS=Brachypodium distachyon GN=rpl22 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.207e-26
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T  K+ RP+A+GR   IK+  CHIT+ L
Sbjct:   34 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANAAHYRDFDKANLFITKAEVSRSTIMKKFRPRARGRSFPIKKSMCHITIAL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ACAM1 (50S ribosomal protein L22 OS=Acaryochloris marina (strain MBIC 11017) GN=rplV PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.576e-26
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A A+Y+ MS  KVRRV+DQIRGRSY E L++LE MPYRAC P+ K++ SA AN   N G +   LV++ A  ++    KR RP+AQGR + I++PTCHIT+ +
Sbjct:   13 AKAKYIRMSPRKVRRVLDQIRGRSYREALIVLEFMPYRACEPVLKVLRSAVANAETNRGLDPVDLVVSHAYADQGPRLKRFRPRAQGRAYQIQKPTCHITIAV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_RHDSA (50S ribosomal protein L22, chloroplastic OS=Rhodomonas salina GN=rpl22 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.059e-26
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = -3
Query:  130 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 465
            K+ E  A A+Y+ MS  KVRRV+ QIRGRSY+E LMILE MPY AC P+ +L+ SAAAN  +N G  +  +++  A  +     KR RP+AQGR   IK+PTCHITV L+++
Sbjct:    6 KQTEARAIAKYIRMSPFKVRRVLKQIRGRSYKEALMILEFMPYAACKPVLQLLQSAAANAQNNYGLQKDQMIVNYAYADPGPVLKRFRPRAQGRGFKIKKPTCHITVSLKEV 117          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CRYJA (50S ribosomal protein L22, chloroplastic OS=Cryptomeria japonica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.059e-26
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  127 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 483
            NR  T K   + A A+++ MS++K RRV  Q+RG +Y E L IL  MP+RACYPI K++ SAAAN  HNMG ++  L +  AEVNE    KR RP+A+GR + I++PTCHI++ L D++
Sbjct:    2 NRASTRK---IRAVAKHVRMSSNKARRVAHQLRGCTYMEALSILNWMPHRACYPILKVLRSAAANAYHNMGIDKGFLFVLMAEVNEGPIFKRFRPRARGRGYPIQKPTCHISITLEDVT 117          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_SORBI (50S ribosomal protein L22, chloroplastic OS=Sorghum bicolor GN=rpl22 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++ +L I KAEV+ +T  K+ RP+A+GR + IK+  C+IT+VL
Sbjct:   33 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKTNLFITKAEVSRSTIMKKFRPRARGRSYSIKKTMCNITIVL 141          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_SACOF (50S ribosomal protein L22, chloroplastic OS=Saccharum officinarum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++ +L I KAEV+ +T  K+ RP+A+GR + IK+  C+IT+VL
Sbjct:   33 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKTNLFITKAEVSRSTIMKKFRPRARGRSYSIKKTMCNITIVL 141          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_SACHY (50S ribosomal protein L22, chloroplastic OS=Saccharum hybrid GN=rpl22 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++ +L I KAEV+ +T  K+ RP+A+GR + IK+  C+IT+VL
Sbjct:   33 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKTNLFITKAEVSRSTIMKKFRPRARGRSYSIKKTMCNITIVL 141          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_CYAPA7.076e-2752.2550S ribosomal protein L22, cyanelle OS=Cyanophora ... [more]
RL22_SYNJA1.207e-2651.4050S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RK22_CUSGR1.207e-2653.5750S ribosomal protein L22, plastid OS=Cuscuta gron... [more]
RK22_BRADI1.207e-2654.1350S ribosomal protein L22, chloroplastic OS=Brachy... [more]
RL22_ACAM11.576e-2652.4350S ribosomal protein L22 OS=Acaryochloris marina ... [more]
RK22_RHDSA2.059e-2651.7950S ribosomal protein L22, chloroplastic OS=Rhodom... [more]
RK22_CRYJA2.059e-2649.5850S ribosomal protein L22, chloroplastic OS=Crypto... [more]
RK22_SORBI2.689e-2653.2150S ribosomal protein L22, chloroplastic OS=Sorghu... [more]
RK22_SACOF2.689e-2653.2150S ribosomal protein L22, chloroplastic OS=Saccha... [more]
RK22_SACHY2.689e-2653.2150S ribosomal protein L22, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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