CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_MAIZE (50S ribosomal protein L22, chloroplastic OS=Zea mays GN=rpl22 PE=3 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 58/109 (53.21%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++ +L I KAEV+ +T  K+ RP+A+GR + IK+  C+IT+VL
Sbjct:   33 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKTNLFITKAEVSRSTIMKKFRPRARGRSYSIKKTMCNITIVL 141          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ANTFO (50S ribosomal protein L22, chloroplastic OS=Anthoceros formosae GN=rpl22 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = -3
Query:  127 KTN-KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 474
            KTN    E  A A+++ +SA KVRRVI++IRGR YE+  MILE M YRACYP+ +L+  AAAN  HN+G N+A  V ++ +V+E T  KR  P+AQGR + I +PT HIT+V++  S
Sbjct:    2 KTNYSNLETQALAKHIRISASKVRRVINEIRGRLYEQAPMILEFMLYRACYPVSQLLSLAAANASHNLGLNKADSVTSEVKVDEGTMLKRFEPRAQGRGYPIHKPTSHITIVIKKKS 118          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ANEMR (50S ribosomal protein L22, plastid OS=Aneura mirabilis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.689e-26
Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = -3
Query:  136 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 471
            T     + ASA+Y+ MS HK RRV+DQIRGR+YE+  MILE MPYR C  I +L+ SAAAN  HN G ++  L I   +V+  +  KR R  A+GR + I +PTCHIT+V+R
Sbjct:    4 TTSNPRIEASAKYIRMSPHKARRVVDQIRGRAYEQAPMILEFMPYRVCDSISQLLSSAAANANHNFGLSKTDLFIDAIQVDGGSFLKRIRSGARGRTYPIHKPTCHITIVMR 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNJB (50S ribosomal protein L22 OS=Synechococcus sp. GN=rplV PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 56/107 (52.34%), Postives = 76/107 (71.03%), Query Frame = -3
Query:  136 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 456
            EV A ARY+ MS  KVRRV+DQIRGR+Y + L++LE MPY AC P+ K++ SA AN  HN G +   LVI++A  ++    KR RP+AQGR + I++ TCHIT+ +R
Sbjct:    7 EVKAVARYIRMSPFKVRRVLDQIRGRTYADALILLEFMPYAACEPVRKVLRSAVANAEHNNGLDPRDLVISQAYADQGPVLKRFRPRAQGRAYPIRKRTCHITIAVR 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_THAPS (50S ribosomal protein L22, chloroplastic OS=Thalassiosira pseudonana GN=rpl22 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  127 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 453
            V A A+Y+ +S HKVR+V+DQIRGRSY+E LMILE +PY A  PI+++++S AAN  +N   ++  LVI++   +E    KR RP+AQGR + I +PTCHITVV++ +S
Sbjct:    7 VKAVAKYVRISPHKVRQVLDQIRGRSYQEALMILEFLPYDAGSPIWQVVHSVAANAKNNYNLDKKKLVISEIFADEGPKLKRIRPRAQGRAYKILKPTCHITVVVKSIS 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_WHEAT (50S ribosomal protein L22, chloroplastic OS=Triticum aestivum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.991e-26
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + + MS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T  K+ RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIPMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMKKFRPRARGRSFPIKKSMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_HORVU (50S ribosomal protein L22, chloroplastic OS=Hordeum vulgare GN=rpl22 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.991e-26
Identity = 59/109 (54.13%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + + MS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T  K+ RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIPMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMKKFRPRARGRSFPIKKSMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CUSOB (50S ribosomal protein L22, plastid OS=Cuscuta obtusiflora GN=rpl22 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.824e-26
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  127 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 462
            K E  A ++   +SA K RRVID+IRGRSYEETL+ILEL+PYRA YPI K +  AA+N        + +L I+KAEVNE  + K+ +P+A+GR   IK+ TCHIT+VL D+S
Sbjct:    6 KPESYAFSQNFPISADKARRVIDRIRGRSYEETLIILELLPYRAAYPILKFVCFAASNASSTSTSKKENLFISKAEVNERPAIKKLKPRARGRSFPIKKATCHITIVLTDLS 117          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_LOLPR (50S ribosomal protein L22, chloroplastic OS=Lolium perenne GN=rpl22 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.022e-25
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   +  + + ++MS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSA+AN  H   F++A+L I KAEV+ +T  K+ RP+A+GR   IK+  CHIT++L
Sbjct:   34 KFERIFKAQKRINMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSASANATHYRNFDKANLFITKAEVSRSTIMKKFRPRARGRSFPIKKNMCHITIIL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PORYE (50S ribosomal protein L22, chloroplastic OS=Porphyra yezoensis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.335e-25
Identity = 55/114 (48.25%), Postives = 77/114 (67.54%), Query Frame = -3
Query:  130 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 471
            T    E  A  +Y+ +S HKVRRV+DQIRGR Y+E L+ILE MPYR C  I +++ SAAAN  HN G N+  L ++KA  ++  + KR +P+AQGR   I +PTCHIT+ + ++
Sbjct:    4 TKNVKETKAVGKYIRLSPHKVRRVLDQIRGRKYQEALIILEFMPYRVCSHIKQILESAAANAEHNDGLNKNQLFVSKAFADKGPTLKRFQPRAQGRAFPIHKPTCHITLGVSEL 117          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_MAIZE2.689e-2653.2150S ribosomal protein L22, chloroplastic OS=Zea ma... [more]
RK22_ANTFO2.689e-2651.2850S ribosomal protein L22, chloroplastic OS=Anthoc... [more]
RK22_ANEMR2.689e-2650.8950S ribosomal protein L22, plastid OS=Aneura mirab... [more]
RL22_SYNJB3.512e-2652.3450S ribosomal protein L22 OS=Synechococcus sp. GN=... [more]
RK22_THAPS3.512e-2651.3850S ribosomal protein L22, chloroplastic OS=Thalas... [more]
RK22_WHEAT5.991e-2654.1350S ribosomal protein L22, chloroplastic OS=Tritic... [more]
RK22_HORVU5.991e-2654.1350S ribosomal protein L22, chloroplastic OS=Hordeu... [more]
RK22_CUSOB7.824e-2653.5750S ribosomal protein L22, plastid OS=Cuscuta obtu... [more]
RK22_LOLPR1.022e-2551.3850S ribosomal protein L22, chloroplastic OS=Lolium... [more]
RK22_PORYE1.335e-2548.2550S ribosomal protein L22, chloroplastic OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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