CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CHAGL (50S ribosomal protein L22, chloroplastic OS=Chaetosphaeridium globosum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.973e-25
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = -3
Query:  136 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 477
            N TN    + A  + + +S HK+R+VIDQIRGRSYE+ LMILE MPY+AC  + KL+ S AAN  HN G N++ L I K   +     KR +P+AQGR + I +PTC++ +V++
Sbjct:    3 NNTNSNISIKAVGKKIRISPHKMRKVIDQIRGRSYEQALMILEFMPYKACNYVLKLLSSVAANANHNFGLNKSDLFIEKIIADGGPKLKRFQPRAQGRGYPILKPTCNLMIVVK 116          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM4 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplV PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.883e-25
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  145 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 477
            + ++K     A  RY+  SA KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  +NMG + ASLVI +A  + A S KR RP+AQGR   IK+ TCHI++
Sbjct:    4 SSSSKTKFAQAHGRYIRGSASKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAENNMGLDPASLVITRATADMAPSMKRYRPRAQGRAFAIKKQTCHISI 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ADICA (50S ribosomal protein L22, chloroplastic OS=Adiantum capillus-veneris GN=rpl22 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.650e-25
Identity = 54/116 (46.55%), Postives = 84/116 (72.41%), Query Frame = -3
Query:  121 KAEVSASA--RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 462
            K++V A A  + + +S  K++R+ID+IR  SYEE L++LE MPYRACYP+ +L+ SAAAN  +N+G N++ L ++KA V+ +   +R RP+AQGR + IK+PTC +T+ L   S++
Sbjct:    6 KSQVGAQALGKNVRVSVTKMQRIIDRIRNCSYEEALVLLEFMPYRACYPVSQLVLSAAANASNNLGLNKSDLFVSKAWVDNSKYLRRFRPRAQGRGYPIKKPTCKVTIQLSSKSIE 121          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROMM (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplV PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.927e-24
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + ASLVIA+A  +   S KR RP+AQGR   IK+ TCHI++ +
Sbjct:   14 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPASLVIAQASADMGPSMKRYRPRAQGRAFAIKKQTCHISIAV 116          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM3 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplV PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.927e-24
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + ASLVIA+A  +   S KR RP+AQGR   IK+ TCHI++ +
Sbjct:   14 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPASLVIAQASADMGPSMKRYRPRAQGRAFAIKKQTCHISIAV 116          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNS9 (50S ribosomal protein L22 OS=Synechococcus sp. (strain CC9902) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.287e-24
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = -3
Query:  139 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 477
            + T+  A   A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  +N+G + ASLVI+ A  +   S KR RP+AQGR   IK+ TCHI++ +
Sbjct:    3 SSTSTAATAQAHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAENNLGLDPASLVISSASADMGPSMKRYRPRAQGRAFQIKKQTCHISIAV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNS3 (50S ribosomal protein L22 OS=Synechococcus sp. (strain CC9311) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.287e-24
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + ASL+I++A  +   S KR RP+AQGR + IK+ TCHI++ +
Sbjct:   13 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPASLIISQATADMGPSMKRYRPRAQGRAYAIKKQTCHISIAV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNPX (50S ribosomal protein L22 OS=Synechococcus sp. (strain WH8102) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.293e-24
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + ASLVI+ A  +   S KR RP+AQGR   IK+ TCHI++ +
Sbjct:   13 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPASLVISSASADMGPSMKRYRPRAQGRAFQIKKQTCHISIAV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROMS (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain AS9601) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.293e-24
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  145 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 474
            +T KKA   A   Y+  SA KVRRV+DQIRGRSY + L++LE MPYR+  PI K++ SA AN  HN+G + ++LVI+ A  N     KR RP+AQGR   IK+ TCHI++
Sbjct:    6 ETTKKA--IAHGNYVRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSTLVISSAWANSGPVMKRYRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNSC (50S ribosomal protein L22 OS=Synechococcus sp. (strain CC9605) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.607e-24
Identity = 52/103 (50.49%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + +SLVI+ A  +   S KR RP+AQGR + IK+ TCHI++ +
Sbjct:   13 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPSSLVISSATADMGPSMKRYRPRAQGRAYQIKKQTCHISIAV 115          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_CHAGL2.973e-2547.3750S ribosomal protein L22, chloroplastic OS=Chaeto... [more]
RL22_PROM43.883e-2551.3550S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RK22_ADICA8.650e-2546.5550S ribosomal protein L22, chloroplastic OS=Adiant... [more]
RL22_PROMM1.927e-2452.4350S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_PROM31.927e-2452.4350S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_SYNS93.287e-2447.7950S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_SYNS33.287e-2450.4950S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_SYNPX4.293e-2451.4650S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_PROMS4.293e-2451.8250S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_SYNSC5.607e-2450.4950S ribosomal protein L22 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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