CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNR3 (50S ribosomal protein L22 OS=Synechococcus sp. (strain RCC307) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.607e-24
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  145 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 471
            T    +  A  R++  S  KVRRV+DQIRGRSY + L++LE MPYR+  PI K++ SA AN  HNMG + ++LV++ A  +   + KR RP+AQGR + IK+ TCHI++
Sbjct:    3 TTASPQALAHGRFVRGSVSKVRRVLDQIRGRSYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNMGLDPSNLVVSMASADMGPTMKRYRPRAQGRAYQIKKQTCHISI 111          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM2 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplV PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.607e-24
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  145 KTNKKAEVS-ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 474
            KT++  +++ A   Y+  SA KVRRV+DQIRGRSY + L++LE MPYR+  PI K++ SA AN  HN+G + ++L+I+ A  N     KR RP+AQGR   IK+ TCHI++
Sbjct:    3 KTSETTKIAIAHGNYIRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSTLIISSAWANSGPVMKRYRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_EMIHU (50S ribosomal protein L22, chloroplastic OS=Emiliania huxleyi GN=rpl22 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.323e-24
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            E  A ARY+ M  +KVRRV+ QI G+SY E L++LE +PY++C PI K++ SA AN  +N+G++   LVI KA  ++    KR RP+AQGR + I +PT HIT+V+
Sbjct:   10 ETMAVARYVRMGPNKVRRVLRQITGKSYSEALLLLEFLPYKSCDPIIKVLRSAVANAKNNLGYDTTKLVIKKAFADQGPVMKRFRPRAQGRAYRILKPTSHITIVV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNPW (50S ribosomal protein L22 OS=Synechococcus sp. (strain WH7803) GN=rplV PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.564e-24
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  S  KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  HN+G + ++LVI++A  +   S KR RP+AQGR + IK+ TCHI++ +
Sbjct:   13 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPSTLVISQASADMGPSMKRYRPRAQGRAYAIKKQTCHISIAV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM5 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplV PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.564e-24
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = -3
Query:  145 KKAEVSASA----RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 465
            KK+E++  A    +Y+  SA KVRRV+DQIRG+SY + L++LE MPYR+  PI K++ SA AN  HN+G   +SLVI+ A  +     KR RP+AQGR   IK+ TCHI++
Sbjct:    3 KKSEMTKKAIAHGKYIRGSASKVRRVLDQIRGKSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMEPSSLVISSASADNGPVMKRFRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM9 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplV PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.249e-23
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  145 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 483
            N ++T K A   A   Y+  SA KVRRV+DQIRGRSY + L++LE MPYR+  PI K++ SA AN  HN G + ++L+I+ A  N     KR RP+AQGR   IK+ TCHI++
Sbjct:    3 NTSETTKTA--IAHGNYVRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNYGMDPSTLIISSAWANNGPVMKRYRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROMP (50S ribosomal protein L22 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplV PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.631e-23
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = -3
Query:  145 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 447
            A  +Y+  SA KVRRV+DQIRG+SY + L++LE MPYR+  PI K++ SA AN  HN+G + +SLVI+ A  +     KR RP+AQGR   IK+ TCHI++
Sbjct:   13 AHGKYIRGSASKVRRVLDQIRGKSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSSLVISSASADNGPVMKRFRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM0 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplV PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.631e-23
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = -3
Query:  145 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 447
            A   Y+  SA KVRRV+DQIRGRSY + L++LE MPYR+  PI K++ SA AN  HN+G + ++LVI+ A  N     KR RP+AQGR   IK+ TCHI++
Sbjct:   13 AHGNYVRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSTLVISSAWANSGPVMKRYRPRAQGRAFSIKKQTCHISI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PAUCH (50S ribosomal protein L22, organellar chromatophore OS=Paulinella chromatophora GN=rpl22 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.783e-23
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  145 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 459
            ++  A  R +  S  KVRRV+DQIRGRSY E L++LE MPYR+  PI K++ SA AN  HN+G + ++L+I +A  +  +S KR RP+AQGR   IK+ TCHI++
Sbjct:    8 SQALAHGRRIKGSVSKVRRVLDQIRGRSYREALIMLEFMPYRSTAPITKVLRSAVANAEHNLGLDPSTLIINRATADMGSSMKRYRPRAQGRAFAIKKQTCHISI 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROMT (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain NATL2A) GN=rplV PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.634e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  145 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 471
            ++ K    A  RY+  SA KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  +N+G + +SL+I+ A  +     KR RP+AQGR   IK+ TCHI++
Sbjct:    4 SSTKTTAQAHGRYIRGSASKVRRVLDQIRGRTYRDALIMLEFMPYRSTEPITKVLRSAVANAENNLGLDPSSLMISTATADMGPPMKRYRPRAQGRAFAIKKQTCHISI 112          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_SYNR35.607e-2447.7150S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_PROM25.607e-2448.6550S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RK22_EMIHU7.323e-2449.0650S ribosomal protein L22, chloroplastic OS=Emilia... [more]
RL22_SYNPW9.564e-2449.5150S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_PROM59.564e-2449.5550S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_PROM91.249e-2349.5650S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_PROMP1.631e-2351.4950S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_PROM01.631e-2352.4850S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RK22_PAUCH2.783e-2349.5250S ribosomal protein L22, organellar chromatophor... [more]
RL22_PROMT3.634e-2347.7150S ribosomal protein L22 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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