CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROM1 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain NATL1A) GN=rplV PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.634e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  145 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 471
            ++ K    A  RY+  SA KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  +N+G + +SL+I+ A  +     KR RP+AQGR   IK+ TCHI++
Sbjct:    4 SSTKTTAQAHGRYIRGSASKVRRVLDQIRGRTYRDALIMLEFMPYRSTEPITKVLRSAVANAENNLGLDPSSLMISTATADMGPPMKRYRPRAQGRAFAIKKQTCHISI 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROMA (50S ribosomal protein L22 OS=Prochlorococcus marinus GN=rplV PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.096e-23
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A  R++  SA KVRRV+DQIRGR+Y + L++LE MPYR+  PI K++ SA AN  +N+G + +SL+I  A  +   S KR RP+AQGR   IK+ TCHI++ +
Sbjct:    9 AHGRFIRGSASKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAENNLGMDPSSLIIKTASADMGPSMKRYRPRAQGRAFAIKKQTCHISIAV 111          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CHLRE (50S ribosomal protein L22, chloroplastic OS=Chlamydomonas reinhardtii GN=ERY2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.854e-22
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = -3
Query:  145 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 447
            A  ++   SA K+RRV+D IRGRSYEE L++ E MPYRAC  I K + SAAAN  HN G  +  LV+++   +E    KR RP+AQGR ++I +PT H+T+
Sbjct:   68 AHLKFQRGSADKIRRVLDVIRGRSYEEALVLCEYMPYRACEKIIKCLMSAAANAKHNKGALKTKLVVSECFADEGPVLKRARPRAQGRANLIMKPTFHMTI 168          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_GUITH (50S ribosomal protein L22, chloroplastic OS=Guillardia theta GN=rpl22 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.952e-22
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = -3
Query:  145 SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 444
            +A+Y+ MS  K++RV++QIRG+SY+E+LMILE MPY AC P+ + + SA AN  HN G N+  LV++ A V+     +R RP+AQGR   I++ T HI +
Sbjct:   14 TAKYIRMSPSKIQRVLNQIRGKSYKESLMILEFMPYAACKPVLQAVQSAGANAQHNKGINKNDLVVSLASVDNGPVLRRFRPRAQGRGFKIQKFTSHIRI 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_GRATE (50S ribosomal protein L22, chloroplastic OS=Gracilaria tenuistipitata GN=rpl22 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 46/111 (41.44%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  139 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 471
            TNK  ++ A+ +Y+ +S  K RRV++QI+G+ Y+E ++ILE M Y+ C  I K I  +A N   N+ + + +L+I +A  N+    KR +P+AQGR   I++PTCHIT+ L
Sbjct:    2 TNKTTKIQATGKYVRLSTAKTRRVLNQIKGKKYQEAILILEFMTYKPC-KIIKKILESAGNNALNLKYEKQNLIIKQAFANDGPKLKRFQPRAQGRAFRIQKPTCHITINL 111          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_GRATL (50S ribosomal protein L22, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl22 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 46/111 (41.44%), Postives = 72/111 (64.86%), Query Frame = -3
Query:  139 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 471
            TNK   + A+ +Y+ +S  K RRV++QI+G+ Y+E ++ILE M Y+ C  I K I  +A N   N+ + + +L+I +A  N+    KR +P+AQGR   I++PTCHIT+ L
Sbjct:    2 TNKTTNIQATGKYVRLSTAKTRRVLNQIKGKKYQEAILILEFMTYKPC-KIIKKILESAGNNALNLKYEKQNLIIKQAFANDGPKLKRFQPRAQGRAFRIQKPTCHITINL 111          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_MYCVP (50S ribosomal protein L22 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.205e-20
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A AR++ +SA K RRVID +RG+S EE L IL   P  A  P+ K+I SAAAN  +N G +  SLV+A    +E  +AKR RP+AQGR + I++ T HITV++
Sbjct:   12 AKARFVRISATKARRVIDLVRGKSVEEALDILRWAPQSASEPVAKVIASAAANAQNNEGLDPTSLVVATIHADEGPTAKRIRPRAQGRAYRIRKRTSHITVIV 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_MYCSM (50S ribosomal protein L22 OS=Mycobacterium smegmatis GN=rplV PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.880e-20
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = -3
Query:  139 SASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 450
            +A ARY+ +SA K RRVID +RG+S EE L IL   P  A  P+ K+I SAAAN  +N G + ++LV+A    +E  +AKR RP+AQGR   I++ T HITV++
Sbjct:   11 TAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIV 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_MYCS2 (50S ribosomal protein L22 OS=Mycobacterium smegmatis GN=rplV PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.880e-20
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = -3
Query:  139 SASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 450
            +A ARY+ +SA K RRVID +RG+S EE L IL   P  A  P+ K+I SAAAN  +N G + ++LV+A    +E  +AKR RP+AQGR   I++ T HITV++
Sbjct:   11 TAKARYVRVSATKARRVIDLVRGKSVEEALDILRWAPQAASEPVAKVIASAAANAQNNEGLDPSTLVVATVYADEGPTAKRIRPRAQGRAFRIRKRTSHITVIV 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_GLOVI (50S ribosomal protein L22 OS=Gloeobacter violaceus GN=rplV PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.880e-20
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = -3
Query:  127 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 456
            EV A AR++ MS  KVRR++DQIRGRSY++ L+IL+ MP+ A  PI K++ SAAAN  HN   +  +LV++ A  +     KR R   +GR   +++ T HITV +R  S
Sbjct:    4 EVKAVARFIRMSPFKVRRILDQIRGRSYQDALIILQFMPHAATEPIKKVLESAAANAEHNFSLDRRALVVSTAFADGGPVLKRFRAGDRGRARPVRKRTSHITVAVRSTS 113          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_PROM13.634e-2347.7150S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RL22_PROMA8.096e-2349.5150S ribosomal protein L22 OS=Prochlorococcus marin... [more]
RK22_CHLRE6.854e-2249.5050S ribosomal protein L22, chloroplastic OS=Chlamy... [more]
RK22_GUITH8.952e-2248.0050S ribosomal protein L22, chloroplastic OS=Guilla... [more]
RK22_GRATE7.578e-2141.4450S ribosomal protein L22, chloroplastic OS=Gracil... [more]
RK22_GRATL9.897e-2141.4450S ribosomal protein L22, chloroplastic OS=Gracil... [more]
RL22_MYCVP2.205e-2049.5150S ribosomal protein L22 OS=Mycobacterium vanbaal... [more]
RL22_MYCSM2.880e-2049.0450S ribosomal protein L22 OS=Mycobacterium smegmat... [more]
RL22_MYCS22.880e-2049.0450S ribosomal protein L22 OS=Mycobacterium smegmat... [more]
RL22_GLOVI2.880e-2045.4550S ribosomal protein L22 OS=Gloeobacter violaceus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
back to top