CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PANGI (50S ribosomal protein L22, chloroplastic OS=Panax ginseng GN=rpl22 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.125e-40
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = -3
Query:  118 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 465
            +K  V A  +YL MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  +NM  NE++LVI+KAEV+E T  K+ +P+A+GR   IKRPTCHI++V++D+SLD+
Sbjct:    5 RKTTVYALGQYLSMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASYNMDSNESNLVISKAEVSEGTIVKKLKPRARGRSFPIKRPTCHISIVVKDISLDE 120          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ATRBE (50S ribosomal protein L22, chloroplastic OS=Atropa belladonna GN=rpl22 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.125e-40
Identity = 81/118 (68.64%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  112 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 465
            KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NMG +EA+LVI+KAEVN  T+ K+ +P+A+GR   IKR TCHIT+V++D+SL+DEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASYNMGSSEANLVISKAEVNGGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLNDEY 122          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_AETCO (50S ribosomal protein L22, chloroplastic OS=Aethionema cordifolium GN=rpl22 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.125e-40
Identity = 78/123 (63.41%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  112 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 480
            + K      V A  +Y+ MS HK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKRPTCHIT+VL D S D +Y
Sbjct:    4 KKKKKSYTSVYALGQYISMSTHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRPTCHITIVLEDRSFDQQY 126          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_GOSBA (50S ribosomal protein L22, chloroplastic OS=Gossypium barbadense GN=rpl22 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.469e-40
Identity = 78/122 (63.93%), Postives = 96/122 (78.69%), Query Frame = -3
Query:  121 NNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 486
            + RN      EV A  +++ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  HN GFNEASL+I++  VNE T+ KR  P+A+GR ++IKRPTCHIT+ L+D+  +
Sbjct:    7 HRRNPYTTSDEVYALGQHICMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANARHNRGFNEASLIISQVAVNEGTTLKRLNPRARGRSYLIKRPTCHITIALKDLEFE 128          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CUCSA (50S ribosomal protein L22, chloroplastic OS=Cucumis sativus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.918e-40
Identity = 81/121 (66.94%), Postives = 100/121 (82.64%), Query Frame = -3
Query:  115 KTNK-KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 474
            KT K + EV A  +++ MS HK RRVIDQIRGRSYEET+MILELMPYRACYPI KL+YSAAAN  HNMGFNE  LVI+KAEVN+ T+ K+ +P+AQGR + IKRPTC IT+VL++ S+++E
Sbjct:    3 KTKKNRYEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSAAANASHNMGFNERDLVISKAEVNQGTTVKKLKPRAQGRSYPIKRPTCSITIVLKNTSVNEE 123          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_DAUCA (50S ribosomal protein L22, chloroplastic OS=Daucus carota GN=rpl22 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.581e-40
Identity = 78/118 (66.10%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  118 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 471
            T  K EV A  +++ MSAHK RRV+DQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NM  NE++LVI+KAEV+E T+ K+ +P+A+GR   IKRPTCHI +V++D+SLD+
Sbjct:    6 TKIKTEVYALGQHISMSAHKARRVVDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANANYNMDSNESNLVISKAEVSEGTATKKLKPRARGRSFTIKRPTCHIAIVVKDISLDE 123          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ARATH (50S ribosomal protein L22, chloroplastic OS=Arabidopsis thaliana GN=rpl22 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.581e-40
Identity = 78/123 (63.41%), Postives = 94/123 (76.42%), Query Frame = -3
Query:  112 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 480
            + K     EV A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S   +Y
Sbjct:    4 KRKKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQY 126          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_IPOPU (50S ribosomal protein L22, chloroplastic OS=Ipomoea purpurea GN=rpl22 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = -3
Query:  106 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAV 465
            KK EV A  +++ MSA K RRVIDQIRGRSYEETLMILELMPYRA YPIFKL+YSAAAN  + M  NEA+LVI+KAEVNE T+ K+ +P+A+GR + IKR TCHIT+VL+D+SLDD  ++
Sbjct:    8 KKPEVYALGQHISMSADKARRVIDQIRGRSYEETLMILELMPYRAGYPIFKLVYSAAANASYTMASNEANLVISKAEVNEGTTVKKFKPRARGRSYPIKRTTCHITIVLKDISLDDSESI 127          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_AETGR (50S ribosomal protein L22, chloroplastic OS=Aethionema grandiflora GN=rpl22 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  112 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 480
            + K      V A  +Y+ MS HK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKRPTCHIT+VL D+S   +Y
Sbjct:    4 KKKKKSYTSVYALGQYISMSTHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRPTCHITIVLEDISFYQQY 126          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_LOBMA (50S ribosomal protein L22, chloroplastic OS=Lobularia maritima GN=rpl22 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.243e-39
Identity = 79/123 (64.23%), Postives = 96/123 (78.05%), Query Frame = -3
Query:  112 KTNKKAEVSASA--RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 474
            K NKK+  S  A  +Y+ MS HK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S  ++Y
Sbjct:    4 KKNKKSYTSVYALGQYISMSTHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYEQY 126          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_PANGI1.125e-4068.9750S ribosomal protein L22, chloroplastic OS=Panax ... [more]
RK22_ATRBE1.125e-4068.6450S ribosomal protein L22, chloroplastic OS=Atropa... [more]
RK22_AETCO1.125e-4063.4150S ribosomal protein L22, chloroplastic OS=Aethio... [more]
RK22_GOSBA1.469e-4063.9350S ribosomal protein L22, chloroplastic OS=Gossyp... [more]
RK22_CUCSA1.918e-4066.9450S ribosomal protein L22, chloroplastic OS=Cucumi... [more]
RK22_DAUCA5.581e-4066.1050S ribosomal protein L22, chloroplastic OS=Daucus... [more]
RK22_ARATH5.581e-4063.4150S ribosomal protein L22, chloroplastic OS=Arabid... [more]
RK22_IPOPU7.289e-4067.5050S ribosomal protein L22, chloroplastic OS=Ipomoe... [more]
RK22_AETGR7.289e-4062.6050S ribosomal protein L22, chloroplastic OS=Aethio... [more]
RK22_LOBMA1.243e-3964.2350S ribosomal protein L22, chloroplastic OS=Lobula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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