CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ACTP7 (50S ribosomal protein L22 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVAQALEILTFTNKKAAALVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ACTP2 (50S ribosomal protein L22 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVAQALEILTFTNKKAAALVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHEFN (50S ribosomal protein L22 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  R+   SA K R V DQIRG    + L IL   P +A   + K++ SA AN  HN G +   L +    V+E  + KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 EVLAKHRFARTSAQKARLVADQIRGLPVSKALEILTFSPKKAAVLVKKVLDSAIANAEHNEGADIDELKVGAVFVDEGPTMKRIMPRAKGRADRIMKRTSHITVVVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEU2 (50S ribosomal protein L22 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEILKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSESM (50S ribosomal protein L22 OS=Pseudomonas syringae pv. tomato GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEILKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSE14 (50S ribosomal protein L22 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEILKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_NITEC (50S ribosomal protein L22 OS=Nitrosomonas eutropha (strain C91) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = -3
Query:  151 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHI 456
            E S   R + +SA K R V++QIRG   ++ + +L   P +    I KL+ SA AN  HN G +   L +A+  + + +S KR  P+A+GR + I +PTC+I
Sbjct:    2 ETSVVLRSVRLSAQKGRLVVNQIRGLQVDQAIKLLTFSPKKGAVIILKLLESAVANAEHNEGADIDELKVARVFIGQGSSLKRVSPRAKGRGNRISKPTCNI 103          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_LISW6 (50S ribosomal protein L22 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  130 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 447
            A A+ + ++  K R VID IRG+   E + IL+  P  A   I K++ SA AN  HN   +  +LV+ +A V+E  + KR RP+AQGR   I + T HITVV+ ++
Sbjct:   10 AVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_LISMO (50S ribosomal protein L22 OS=Listeria monocytogenes GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  130 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 447
            A A+ + ++  K R VID IRG+   E + IL+  P  A   I K++ SA AN  HN   +  +LV+ +A V+E  + KR RP+AQGR   I + T HITVV+ ++
Sbjct:   10 AVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEV 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_LISMH (50S ribosomal protein L22 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplV PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  130 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 447
            A A+ + ++  K R VID IRG+   E + IL+  P  A   I K++ SA AN  HN   +  +LV+ +A V+E  + KR RP+AQGR   I + T HITVV+ ++
Sbjct:   10 AVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEV 115          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_ACTP72.611e-1341.6750S ribosomal protein L22 OS=Actinobacillus pleuro... [more]
RL22_ACTP22.611e-1341.6750S ribosomal protein L22 OS=Actinobacillus pleuro... [more]
RL22_SHEFN3.410e-1340.7450S ribosomal protein L22 OS=Shewanella frigidimar... [more]
RL22_PSEU23.410e-1339.8150S ribosomal protein L22 OS=Pseudomonas syringae ... [more]
RL22_PSESM3.410e-1339.8150S ribosomal protein L22 OS=Pseudomonas syringae ... [more]
RL22_PSE143.410e-1339.8150S ribosomal protein L22 OS=Pseudomonas syringae ... [more]
RL22_NITEC3.410e-1337.2550S ribosomal protein L22 OS=Nitrosomonas eutropha... [more]
RL22_LISW63.410e-1340.5750S ribosomal protein L22 OS=Listeria welshimeri s... [more]
RL22_LISMO3.410e-1340.5750S ribosomal protein L22 OS=Listeria monocytogene... [more]
RL22_LISMH3.410e-1340.5750S ribosomal protein L22 OS=Listeria monocytogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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