CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHEB2 (50S ribosomal protein L22 OS=Shewanella baltica (strain OS223) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  R+   SA K R V DQIRG    + L IL   P +A   + K++ SA AN  HN G +   L +    V+E  + KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 EVLAKHRFARTSAQKARLVADQIRGLPVAKALEILTFSPKKAAVLVKKVLDSAIANAEHNEGADIDELKVGAVFVDEGPTMKRIMPRAKGRADRIMKRTSHITVVVSD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSYWF (50S ribosomal protein L22 OS=Psychrobacter sp. (strain PRwf-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 42/104 (40.38%), Postives = 59/104 (56.73%), Query Frame = -3 
Query:  145 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 456
            EV+A  R   +SA KVR V D++RG+S E  L IL     +    + K + SA AN  HN G +  +L ++   V+E  + KR  P+A+GR   I + TCHITV
Sbjct:    2 EVTAKLRGAAISAQKVRLVADEVRGKSIERALDILAFSNKKGAVFVKKCLESAIANAEHNHGLDIDTLKVSTIYVDEGITLKRILPRAKGRADRISKRTCHITV 105
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEPW (50S ribosomal protein L22 OS=Pseudomonas putida (strain W619) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEPK (50S ribosomal protein L22 OS=Pseudomonas putida (strain KT2440) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEPG (50S ribosomal protein L22 OS=Pseudomonas putida (strain GB-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEPF (50S ribosomal protein L22 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEP1 (50S ribosomal protein L22 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEMY (50S ribosomal protein L22 OS=Pseudomonas mendocina (strain ymp) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEFS (50S ribosomal protein L22 OS=Pseudomonas fluorescens (strain SBW25) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109
[Close]
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEF5 (50S ribosomal protein L22 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3 
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    3 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 110
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_SHEB24.453e-1340.7450S ribosomal protein L22 OS=Shewanella baltica (s... [more]
RL22_PSYWF4.453e-1340.3850S ribosomal protein L22 OS=Psychrobacter sp. (st... [more]
RL22_PSEPW4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas putida (s... [more]
RL22_PSEPK4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas putida (s... [more]
RL22_PSEPG4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas putida (s... [more]
RL22_PSEPF4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas fluoresce... [more]
RL22_PSEP14.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas putida (s... [more]
RL22_PSEMY4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas mendocina... [more]
RL22_PSEFS4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas fluoresce... [more]
RL22_PSEF54.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas fluoresce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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