CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEE4 (50S ribosomal protein L22 OS=Pseudomonas entomophila (strain L48) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEAE (50S ribosomal protein L22 OS=Pseudomonas aeruginosa GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEAB (50S ribosomal protein L22 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEA8 (50S ribosomal protein L22 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEA7 (50S ribosomal protein L22 OS=Pseudomonas aeruginosa (strain PA7) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   E L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGEALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_POLNS (50S ribosomal protein L22 OS=Polynucleobacter necessarius (strain STIR1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A  +   +SA K R V DQIRG      L IL   P +A + + K++ SA AN  HN G +   L ++   V++ TS KR   +A+GR + I++ TCHI+V L
Sbjct:    4 EVKAIHKGARISAQKTRLVADQIRGLPIARALNILNFSPKKAAFIVKKVVESAVANAEHNKGADIDELKVSAIIVDKGTSLKRFTARAKGRGNQIEKQTCHISVTL 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_HAES1 (50S ribosomal protein L22 OS=Haemophilus somnus (strain 129Pt) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D +RG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLVRGKKVAQALEILTFTNKKAAALVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_HAEPS (50S ribosomal protein L22 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+     L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVSAALEILTFTNKKAAALVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_GEOSW (50S ribosomal protein L22 OS=Geobacillus sp. (strain WCH70) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +  A AR + ++  K R VID IRG+   E + IL   P  A   I K++ SA AN  HN   +   LVI +A V+E  + KR RP+A GR   I + T HIT+V+ +
Sbjct:    2 QAKAVARTVRIAPRKARLVIDLIRGKEVGEAVAILRHTPKAASPIIEKVLKSAVANAEHNYDMDVNKLVITEAYVDEGPTLKRFRPRAMGRASAINKRTSHITIVVSE 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_GEOKA (50S ribosomal protein L22 OS=Geobacillus kaustophilus GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +  A AR + ++  K R VID IRG+   E   IL   P  A   I K++ SA AN  HN   +  +LVI +A V+E  + KR RP+A GR   I + T HIT+V+ +
Sbjct:    2 QAKAVARTVRIAPRKARLVIDLIRGKEVGEAFAILRHTPKAASPIIEKVLKSAVANAEHNYDMDVNNLVITQAYVDEGPTLKRFRPRAMGRASAINKRTSHITIVVSE 109          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_PSEE44.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas entomophi... [more]
RL22_PSEAE4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas aeruginos... [more]
RL22_PSEAB4.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas aeruginos... [more]
RL22_PSEA84.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas aeruginos... [more]
RL22_PSEA74.453e-1339.8150S ribosomal protein L22 OS=Pseudomonas aeruginos... [more]
RL22_POLNS4.453e-1339.6250S ribosomal protein L22 OS=Polynucleobacter nece... [more]
RL22_HAES14.453e-1340.7450S ribosomal protein L22 OS=Haemophilus somnus (s... [more]
RL22_HAEPS4.453e-1341.6750S ribosomal protein L22 OS=Haemophilus parasuis ... [more]
RL22_GEOSW4.453e-1339.8150S ribosomal protein L22 OS=Geobacillus sp. (stra... [more]
RL22_GEOKA4.453e-1339.8150S ribosomal protein L22 OS=Geobacillus kaustophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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