CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_BAUCH (50S ribosomal protein L22 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 46/108 (42.59%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY + SA K+R VI+ IRG+   + L IL     +A   + K++ SA AN  HN G +   L IAK  V+   S KR  P+A+GRV  I + T HITVV+ D
Sbjct:    2 ETIAKHRYANSSAQKLRLVINLIRGKEVSKALEILTYTNKKAANLVKKVLESAIANAEHNDGADVDDLKIAKIFVDVGPSIKRIMPRAKGRVDHILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_AGGAC (50S ribosomal protein L22 OS=Aggregatibacter actinomycetemcomitans GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVAQALEILTYTNKKASALVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHELP (50S ribosomal protein L22 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  R+   S  K R V DQIRG    + L IL   P +A   + K++ SA AN  HN G +   L + K  V+E  + KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 EVLAKHRFARTSPQKCRLVADQIRGLPVAKALEILTFSPKKAAVLVKKVLDSAIANAEHNEGADIDELKVGKVFVDEGPTMKRIMPRAKGRADRIIKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_RUBXD (50S ribosomal protein L22 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A A+Y+ +S  K R V DQIRG+SY E   IL     RA   +  ++ SAAAN  +N   +   L + +  V+E  + KR RP+A GR  MI++ T HIT+ L
Sbjct:    3 AVAKYVRISPRKARLVADQIRGKSYPEAASILRFTNKRAARILGDVLKSAAANAENNHDADPELLFVEEVRVDEGPTIKRYRPRALGRATMIRKRTSHITLRL 105          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PASMU (50S ribosomal protein L22 OS=Pasteurella multocida GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+     L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVAAALEILTFTNKKAAALVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_NITEU (50S ribosomal protein L22 OS=Nitrosomonas europaea GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  151 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHI 456
            E SA  R + +SA K R V DQIRG   E  + +L   P +    I KL+ SA AN  HN G +   L I++  + +  + KR  P+A+GR + I +PTC+I
Sbjct:    2 ETSAVLRSVRLSAQKGRLVADQIRGLQVERAIRLLTFSPKKGASIILKLLESAVANAEHNEGADIDELKISQIFIGQGATLKRVSPRAKGRGNRISKPTCNI 103          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_MYCMO (50S ribosomal protein L22 OS=Mycoplasma mobile GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A+ +   +SA K R V D IR +S  + L IL     +A     KL+ SA AN ++N G N   LV+ K  VNE  + KR +P++QGR + I + T H+ +VL++
Sbjct:    2 ESRATVKVQRISARKARLVADLIRYKSANDALSILYNTNKKASALFIKLLNSAVANAINNHGMNNEKLVVEKVLVNEGPTLKRFQPRSQGRAYSIFKRTSHLEIVLKE 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ENT38 (50S ribosomal protein L22 OS=Enterobacter sp. (strain 638) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETLAQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVFVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_DEHSC (50S ribosomal protein L22 OS=Dehalococcoides sp. (strain CBDB1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  +    SA KVR  +D +RG+   E + +L  M       + K+I SAAAN  +N   N A L I++   +EA   KR RP+A+GRV  I + + HITVV+ D
Sbjct:    2 EVKAIVKDTGYSALKVRLCVDLVRGKKVSEAITLLRFMTSPTAKVVSKVIKSAAANAENNFQMNPADLKISQIYADEARMLKRMRPQARGRVSPILKRSSHITVVVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_DEHSB (50S ribosomal protein L22 OS=Dehalococcoides sp. (strain BAV1) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  +    SA KVR  +D +RG+   E + +L  M       + K+I SAAAN  +N   N A L I++   +EA   KR RP+A+GRV  I + + HITVV+ D
Sbjct:    2 EVKAIVKDTGYSALKVRLCVDLVRGKKVSEAITLLRFMTSPTAKVVSKVIKSAAANAENNFQMNPADLKISQIYADEARMLKRMRPQARGRVSPILKRSSHITVVVAD 109          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_BAUCH5.816e-1342.5950S ribosomal protein L22 OS=Baumannia cicadellini... [more]
RL22_AGGAC5.816e-1341.6750S ribosomal protein L22 OS=Aggregatibacter actin... [more]
RL22_SHELP7.596e-1340.7450S ribosomal protein L22 OS=Shewanella loihica (s... [more]
RL22_RUBXD7.596e-1340.7850S ribosomal protein L22 OS=Rubrobacter xylanophi... [more]
RL22_PASMU7.596e-1341.6750S ribosomal protein L22 OS=Pasteurella multocida... [more]
RL22_NITEU7.596e-1339.2250S ribosomal protein L22 OS=Nitrosomonas europaea... [more]
RL22_MYCMO7.596e-1337.9650S ribosomal protein L22 OS=Mycoplasma mobile GN=... [more]
RL22_ENT387.596e-1341.6750S ribosomal protein L22 OS=Enterobacter sp. (str... [more]
RL22_DEHSC7.596e-1339.8150S ribosomal protein L22 OS=Dehalococcoides sp. (... [more]
RL22_DEHSB7.596e-1339.8150S ribosomal protein L22 OS=Dehalococcoides sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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