CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ALKMQ (50S ribosomal protein L22 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A A+++ ++  KV+ V+D +RG+  +E L IL+  P  A   + KLI SA AN  +N   +   L +++   N+  + KR RP+A GR   I++ T HI +V+++
Sbjct:    2 EARAIAKFVRIAPRKVKIVVDLVRGKQVDEALAILKHTPKGASPVVIKLIQSAVANAENNHEMDREQLFVSEVYANQGPTMKRFRPRAMGRATTIRKRTSHIGIVVKE 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ALISL (50S ribosomal protein L22 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+  +S  K R V DQIRG+S ++ L IL     +A   I K++ SA AN  HN G +   L +AK  V+E    KR  P+A+GR   I + + HIT+V+ D
Sbjct:    2 EAIAKHRFASISPQKARLVADQIRGKSVDQALEILTFSNKKAAVIIKKVVESAIANAEHNEGADIDDLNVAKIFVDEGPIMKRIMPRAKGRADRILKRSSHITIVVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHIFL (50S ribosomal protein L22 OS=Shigella flexneri GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVQVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHIF8 (50S ribosomal protein L22 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVQVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PSEU5 (50S ribosomal protein L22 OS=Pseudomonas stutzeri (strain A1501) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV+A      +SA K R V DQIRG+   + L +L     +A   + K++ SA AN  HN G +   L ++   VNE  S KR  P+A+GR   I + +CHITV + D
Sbjct:    2 EVAAKLSGARISAQKARLVADQIRGKKVGDALNLLAFSSKKAAEIMKKVLESAVANAEHNEGADVDDLKVSTVFVNEGRSLKRIMPRAKGRADRIVKRSCHITVKVAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PROAC (50S ribosomal protein L22 OS=Propionibacterium acnes GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  139 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 447
            A AR++ MSA K RRVI+ +RG    + + +L+  P  A  PI K+I SA AN     G     L I++A V+E  + +R RP+A+G    I + + HITVV+
Sbjct:   22 AIARHVRMSASKCRRVINLVRGMDAVDAVTMLKFQPQAAAEPIRKVIASAMANAEQTEGLRADDLYISQAFVDEGITMRRIRPRAKGSASRILKRSAHITVVV 124          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_PETMO (50S ribosomal protein L22 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = -3
Query:  121 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 456
            E  A  +Y+ +S  K R + + IR +   E L IL   P ++   ++K + SA AN  +N G N  +L +++  VNE    KR  P++ GR  ++++   HI + +RD S D
Sbjct:   37 EARAVTKYVRISPRKARSMANSIRNKDISEALQILTFSPKKSARILYKTLMSAIANAENNFGLNAENLYVSEIMVNEGPRLKRLWPRSHGRADILQKRMSHIYITVRDKSAD 148          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_METSB (50S ribosomal protein L22 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = -3
Query:  124 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 465
            K  E  A AR L +S  K+  +   IRG+  E  L  LE    RA + + K + SA AN  +N       LV+A+A V +A   KR  P+A+GR   I++P  H+T+VLR++++
Sbjct:   11 KDNEAKAVARMLRISPQKLNLLAQLIRGKKVERALAELEFSRKRAAFDVRKTLESAIANAENNHSLEVDDLVVAEAFVGKALVMKRFSPRARGRSGKIQKPFSHLTIVLREVAV 124          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_DESOH (50S ribosomal protein L22 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +VSA+ARYL +   KVR ++D I+G+S E+ L  L  MP +    + K + SA AN       +   LVI    V++  + KR RP+A+GR   I + T HITVVL +
Sbjct:    3 QVSATARYLRIGPQKVRMLVDGIKGKSVEKGLNTLRFMPNKGAGLVEKALRSAVAN-AEEKNMDVDGLVILNVLVDQGPTLKRFRPRARGRATRILKRTSHITVVLAE 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_BACWK (50S ribosomal protein L22 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +  A  R + ++  KVR V+D IRG+   E + IL   P  A   + K++ SA AN  HN   +  +LV+ K  V+E  + KR RP+A GR   I + T HITVV+ +
Sbjct:    2 QAKAVVRTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEHNYEMDINNLVVEKVFVDEGPTLKRFRPRAMGRASQINKRTSHITVVVSE 109          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_ALKMQ7.596e-1334.2650S ribosomal protein L22 OS=Alkaliphilus metallir... [more]
RL22_ALISL7.596e-1339.8150S ribosomal protein L22 OS=Aliivibrio salmonicid... [more]
RL22_SHIFL9.920e-1340.7450S ribosomal protein L22 OS=Shigella flexneri GN=... [more]
RL22_SHIF89.920e-1340.7450S ribosomal protein L22 OS=Shigella flexneri ser... [more]
RL22_PSEU59.920e-1338.8950S ribosomal protein L22 OS=Pseudomonas stutzeri ... [more]
RL22_PROAC9.920e-1339.8150S ribosomal protein L22 OS=Propionibacterium acn... [more]
RL22_PETMO9.920e-1332.1450S ribosomal protein L22 OS=Petrotoga mobilis (st... [more]
RL22_METSB9.920e-1336.8450S ribosomal protein L22 OS=Methylocella silvestr... [more]
RL22_DESOH9.920e-1339.8150S ribosomal protein L22 OS=Desulfococcus oleovor... [more]
RL22_BACWK9.920e-1337.9650S ribosomal protein L22 OS=Bacillus weihenstepha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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