CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ACTSZ (50S ribosomal protein L22 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.920e-13
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   SA K R V D IRG+     L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSAQKARLVADLIRGKKVAAALEILTYTNKKAAALVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ROSCS (50S ribosomal protein L22 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +  A  +Y+ +S  KVR V+D +RG+  +  L IL  +P++A   I + I SA AN  +N      +LV+     +E  + KR  P+A+GR   I++ T HITV++ D
Sbjct:    2 QAKAVTKYVRISPTKVRPVMDLVRGKPVDRALAILRYLPHKAAREIARTIESARANATNNYDMAPDALVVKYIFADEGPAFKRIMPRARGRADRIRKRTTHITVIVDD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_LEUCK (50S ribosomal protein L22 OS=Leuconostoc citreum (strain KM20) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 36/105 (34.29%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  133 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 447
            A+A+ + ++  K R V+D IR +S  E   IL+ +P  +   I+K++ SA AN  +N   +   L++ +A  NE  + KR RP+A+G    I + T HIT+V+ +
Sbjct:   10 ATAKIVRVAPRKARLVLDTIRRKSVNEAYAILKFLPNTSTEDIYKVLNSAVANAENNFSLDREDLIVKEAFANEGPTLKRFRPRAKGSASPINKRTSHITIVVAE 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_HAES2 (50S ribosomal protein L22 OS=Haemophilus somnus (strain 2336) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  RY   S  K R V D +RG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRYARTSVQKARLVADLVRGKKVAQALEILTFTNKKAAALVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_EXISA (50S ribosomal protein L22 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            +  ASA  + ++  K R V+D IRG+   E L +L      A   + K++ SA AN  HN   N  +LV+ +A VNE  + KR RP+A GR   I + T HI +V+ +
Sbjct:    2 QAKASANMVRLAPRKARLVVDLIRGKQVGEALSVLAHTNKAASPVVEKVLKSAIANAEHNYDMNIENLVVTEAYVNEGPTLKRFRPRAMGRASRINKRTSHIHIVVTE 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_AKKM8 (50S ribosomal protein L22 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 39/108 (36.11%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            EV A  +Y  +SA K+R V  +I+G S  +   IL   P +  Y + K + SA AN  +N   +  +LV+    V+E  + +R  P+A+G  +MI++ T HITV+L D
Sbjct:    2 EVKAVYKYARISAKKMRDVAQEIQGLSVSQATDILSYTPKKGAYLLNKTLKSALANAENNAELSVDTLVVKSVMVDEGPTMRRTMPRARGSANMIRKRTSHITVILAD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_VESOH (50S ribosomal protein L22 OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = -3
Query:  145 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 456
            EV A  +Y   SA K R V DQIR +S EE L IL     +A   + K++ S  +N  HN G +   L +    ++E ++ KR RP+A+GR + I + T HITV
Sbjct:    3 EVKAVHKYAKTSAFKARLVADQIRLKSVEEALNILSFSNKKAAVLVKKVLNSVISNAEHNDGLDIDELFVTSIYIDEGSTMKRIRPRAKGRANRILKRTSHITV 106          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHISS (50S ribosomal protein L22 OS=Shigella sonnei (strain Ss046) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHIDS (50S ribosomal protein L22 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SHIBS (50S ribosomal protein L22 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_ACTSZ9.920e-1341.6750S ribosomal protein L22 OS=Actinobacillus succin... [more]
RL22_ROSCS1.296e-1235.1950S ribosomal protein L22 OS=Roseiflexus castenhol... [more]
RL22_LEUCK1.296e-1234.2950S ribosomal protein L22 OS=Leuconostoc citreum (... [more]
RL22_HAES21.296e-1239.8150S ribosomal protein L22 OS=Haemophilus somnus (s... [more]
RL22_EXISA1.296e-1237.0450S ribosomal protein L22 OS=Exiguobacterium sp. (... [more]
RL22_AKKM81.296e-1236.1150S ribosomal protein L22 OS=Akkermansia muciniphi... [more]
RL22_VESOH1.692e-1239.4250S ribosomal protein L22 OS=Vesicomyosocius okuta... [more]
RL22_SHISS1.692e-1240.7450S ribosomal protein L22 OS=Shigella sonnei (stra... [more]
RL22_SHIDS1.692e-1240.7450S ribosomal protein L22 OS=Shigella dysenteriae ... [more]
RL22_SHIBS1.692e-1240.7450S ribosomal protein L22 OS=Shigella boydii serot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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