CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_OENAR (50S ribosomal protein L22, chloroplastic OS=Oenothera argillicola GN=rpl22 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  118 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 474
            K     EV A  +Y+ MSA K RRVIDQIRGRSYEETLM+L LMPYRAC PI KL+ SAAAN  HNM FNEA+LVI+KAEVNE T+ K+ +P+A+GR + I+RPTCHI +VL+D S D+
Sbjct:    3 KKKTYGEVYALGQYISMSAPKARRVIDQIRGRSYEETLMLLALMPYRACDPILKLVNSAAANARHNMSFNEATLVISKAEVNEGTTVKKLKPRARGRSYPIRRPTCHIRIVLQDTSFDE 121          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_NYMAL (50S ribosomal protein L22, chloroplastic OS=Nymphaea alba GN=rpl22 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.592e-37
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = -3
Query:  133 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 474
            K     E+ A AR++ MSA K RRVIDQIRG SYE+TLMILELMPYRACYPIFKL+YSAAAN  HN G  EA L I+KAEVNE    KR +P+A+GR + IKRPTCHIT+VL +
Sbjct:    3 KKTSGTEIRALARHIGMSAQKARRVIDQIRGCSYEQTLMILELMPYRACYPIFKLVYSAAANASHNRGLKEADLFISKAEVNEGVIVKRLKPRARGRSYPIKRPTCHITIVLSE 116          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_NUPAD (50S ribosomal protein L22, chloroplastic OS=Nuphar advena GN=rpl22 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.592e-37
Identity = 76/114 (66.67%), Postives = 89/114 (78.07%), Query Frame = -3
Query:  133 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 474
            K  +  E+ A AR++ MSA K RRVIDQIRG SYE+TLMILELMPYRACYPIFKL+YSAAAN  HN G  EA L I+KAEVNE    KR +P+A+GR + IKRPTCHIT+VL +
Sbjct:    3 KKTQGTEIRALARHIGMSAQKARRVIDQIRGCSYEQTLMILELMPYRACYPIFKLVYSAAANASHNRGLKEADLFISKAEVNEGVIVKRLKPQARGRSYPIKRPTCHITIVLSE 116          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PIPCE (50S ribosomal protein L22, chloroplastic OS=Piper cenocladum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.386e-37
Identity = 76/126 (60.32%), Postives = 96/126 (76.19%), Query Frame = -3
Query:  118 SPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 495
            S   +R K   +  V A AR + +SAHK RRVIDQIRGRSY ETL +LELMPYRA YPIFKL+YSAAA+  HN+GF EA   I+KAEVNE    KR +P+A+GR ++IK+PTCHIT+VL+D +L++
Sbjct:   10 SEQKHRLKRIARTRVQAFARDVRISAHKARRVIDQIRGRSYVETLTLLELMPYRASYPIFKLLYSAAASASHNLGFKEADSYISKAEVNEGAVLKRLKPRARGRSYLIKKPTCHITIVLKDRTLNE 135          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CHLSC (50S ribosomal protein L22, chloroplastic OS=Chloranthus spicatus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.775e-37
Identity = 76/118 (64.41%), Postives = 93/118 (78.81%), Query Frame = -3
Query:  127 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 480
            + + N   EV A AR++ MSAHK+RRVIDQIRGRSYE+TLMILELMPYRA YPIF+LIYSAAAN    MG  EA  +I+KAEVNE T  K+ +P+A+GR + IK+PTCHI +VL+D S
Sbjct:    3 KKRFNSDIEVQAFARHICMSAHKMRRVIDQIRGRSYEQTLMILELMPYRASYPIFRLIYSAAANASKTMGSKEADSLISKAEVNEGTFIKKLKPRARGRSYPIKKPTCHIIIVLKDKS 120          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ILLOL (50S ribosomal protein L22, chloroplastic OS=Illicium oligandrum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.680e-36
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = -3
Query:  127 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 474
            K   + EV A A+Y+ MSAHK RRVIDQIRGRSYE+TLMILELMPYRA Y IFKL+YSAAAN  HN G NEA   I+KAEVN     K+ +P+A+GR + IKRPTCHIT+VL   S
Sbjct:    3 KGKSRTEVKALAQYICMSAHKARRVIDQIRGRSYEQTLMILELMPYRASYHIFKLVYSAAANASHNKGLNEADSFISKAEVNGGVIVKKCKPRARGRSYPIKRPTCHITIVLNKRS 118          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ACOCL (50S ribosomal protein L22, chloroplastic OS=Acorus calamus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.866e-36
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = -3
Query:  133 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 480
            +N      E  A A+ + MSA+K RRVIDQIRGRSYEET+MILELMPYRA +PI KL+YSAAAN ++NMG +EA L I+KAEVN  T  K+ RP+A+GR + IKRPTCHIT+VL+D
Sbjct:    4 KNWITTGTEARALAQNISMSAYKARRVIDQIRGRSYEETIMILELMPYRASFPILKLVYSAAANAINNMGLSEADLFISKAEVNGGTFVKKLRPRARGRSYAIKRPTCHITIVLKD 119          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ACOAM (50S ribosomal protein L22, chloroplastic OS=Acorus americanus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.866e-36
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = -3
Query:  133 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 480
            +N      E  A A+ + MSA+K RRVIDQIRGRSYEET+MILELMPYRA +PI KL+YSAAAN ++NMG +EA L I+KAEVN  T  K+ RP+A+GR + IKRPTCHIT+VL+D
Sbjct:    4 KNWITTGTEARALAQNISMSAYKARRVIDQIRGRSYEETIMILELMPYRASFPILKLVYSAAANAINNMGLSEADLFISKAEVNGGTFVKKLRPRARGRSYAIKRPTCHITIVLKD 119          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CUSEX (50S ribosomal protein L22, plastid OS=Cuscuta exaltata GN=rpl22 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.744e-36
Identity = 72/116 (62.07%), Postives = 93/116 (80.17%), Query Frame = -3
Query:  118 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 465
            K  E+ A  +++ MSA K RR+ID+IRGRSYEETL+ILELMPYRA YPIFKL+YSAA+N  + +  NEA+LVI KAEVNE  + K+ +P+A+GR + IKRPTCHIT+VL+D+S  D
Sbjct:    5 KPPEIYALGQHISMSADKARRIIDRIRGRSYEETLLILELMPYRAAYPIFKLVYSAASNASYTLASNEANLVIIKAEVNEGPAIKKLKPRARGRCYPIKRPTCHITIVLKDISFYD 120          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_AMBTC (50S ribosomal protein L22, chloroplastic OS=Amborella trichopoda GN=rpl22 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.385e-36
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = -3
Query:  133 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 456
            E+ A A+++ MS HK RRVIDQIRG SYE+TLMILELMPYR CYP+FKL+YSAAAN  HNMG NEA   I+KAEV+     K+ +PKA+GR + IKRPTCHIT+VL++
Sbjct:    9 EIRALAKHICMSPHKARRVIDQIRGCSYEQTLMILELMPYRVCYPVFKLVYSAAANASHNMGLNEADSFISKAEVHGGAMMKKFKPKARGRSYPIKRPTCHITIVLKE 116          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_OENAR1.164e-3764.7150S ribosomal protein L22, chloroplastic OS=Oenoth... [more]
RK22_NYMAL2.592e-3766.6750S ribosomal protein L22, chloroplastic OS=Nympha... [more]
RK22_NUPAD2.592e-3766.6750S ribosomal protein L22, chloroplastic OS=Nuphar... [more]
RK22_PIPCE3.386e-3760.3250S ribosomal protein L22, chloroplastic OS=Piper ... [more]
RK22_CHLSC5.775e-3764.4150S ribosomal protein L22, chloroplastic OS=Chlora... [more]
RK22_ILLOL1.680e-3665.5250S ribosomal protein L22, chloroplastic OS=Illici... [more]
RK22_ACOCL2.866e-3663.7950S ribosomal protein L22, chloroplastic OS=Acorus... [more]
RK22_ACOAM2.866e-3663.7950S ribosomal protein L22, chloroplastic OS=Acorus... [more]
RK22_CUSEX3.744e-3662.0750S ribosomal protein L22, plastid OS=Cuscuta exal... [more]
RK22_AMBTC6.385e-3665.7450S ribosomal protein L22, chloroplastic OS=Ambore... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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