CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_MEDSA (50S ribosomal protein L22, chloroplastic OS=Medicago sativa GN=rpl22 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.542e-32
Identity = 71/139 (51.08%), Postives = 94/139 (67.63%), Query Frame = -3
Query:  130 ISPPNNRN---------------KTNKK-AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 498
            ++P NN N               +TNK  AE  A  +++ MSA K RRVID IRGR YEETLMILELMPYRAC  I K+++SA AN  +N+G +++SLVI+KAEVNE  + KR RP+AQGR + I + TCHIT+ ++ +
Sbjct:   51 VTPNNNNNNPFACHVSTSQFGVQETNKSYAEAVAVGKHIRMSADKARRVIDTIRGRPYEETLMILELMPYRACETILKIVFSAGANASNNLGLSKSSLVISKAEVNEGRTMKRTRPRAQGRANRILKRTCHITITVKGL 189          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_MARPO (50S ribosomal protein L22, chloroplastic OS=Marchantia polymorpha GN=rpl22 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.246e-31
Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = -3
Query:  139 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 477
            N +NKK  + A A+++HMS HKVRRV+ QIRGRSYE+ LMILE MPYRAC PI +L+ SAAAN  HN G ++ +L I++ +VN+ T  KR +P+AQGR + I +PTCHIT+VL
Sbjct:    4 NTSNKK--IRAVAKHIHMSPHKVRRVVSQIRGRSYEQALMILEFMPYRACNPILQLLSSAAANANHNFGLSKTNLFISEIQVNKGTFFKRFQPRAQGRGYPIHKPTCHITIVL 114          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CHLAT (50S ribosomal protein L22, chloroplastic OS=Chlorokybus atmophyticus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.378e-30
Identity = 59/109 (54.13%), Postives = 85/109 (77.98%), Query Frame = -3
Query:  130 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 456
            E  A ARY+ MS +KVRR++DQIRGRSYEE LMIL+ MPYRAC P+ K++YSAAAN  HN+G N++ L I++ +V++    KR +P+AQGR + I++PTCHI++ ++ +
Sbjct:   10 EAKAFARYITMSPYKVRRIVDQIRGRSYEEALMILQFMPYRACNPVLKVLYSAAANAKHNLGLNKSELSISEVKVDQGPVMKRFQPRAQGRGYPIRKPTCHISLTVKGL 118          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ANGEV (50S ribosomal protein L22, chloroplastic OS=Angiopteris evecta GN=rpl22 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.800e-30
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = -3
Query:  139 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 462
            K E  ASARY  MSA+K RRVI+QIRGRSYE+ L++LE MPYRACY I +LI SAAAN  HN+G + A+  I++A+V+E+T  KR +P+AQGR + I +PTCHIT+ +
Sbjct:    8 KVEARASARYFKMSANKARRVINQIRGRSYEQALILLEFMPYRACYAILQLISSAAANANHNLGLSRANPFISEAKVDESTLFKRFQPRAQGRGYPIHKPTCHITITM 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PEA (50S ribosomal protein L22, chloroplastic OS=Pisum sativum GN=rpl22 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.350e-30
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = -3
Query:  130 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 459
            AE  A  R++ MSA K RRV+DQIRGR YE +LM+LELMPYRAC  I K+++SA AN  HN+G +++SL I+KAEVNE  + KR R +AQGR + I + TCHIT+ +R +
Sbjct:   84 AETYAVGRHIRMSADKARRVVDQIRGRPYEASLMVLELMPYRACEAIIKIVFSAGANASHNLGLSKSSLFISKAEVNEGKTLKRVRARAQGRANQILKRTCHITITVRGL 193          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_STAPU (50S ribosomal protein L22, chloroplastic OS=Staurastrum punctulatum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.009e-30
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = -3
Query:  115 ISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 498
            +SPP    +     EV A A+ + MS HKVR+VIDQIRGRSYEE LM+LE MPYRACYPI + + SAAAN  HN+G ++A+L+I+K  V++    KR RP+AQGR + I++P+C ITV +++    +E
Sbjct:    9 VSPPRRDLQ-----EVRAIAKRVRMSPHKVRKVIDQIRGRSYEEALMLLEFMPYRACYPILQTVCSAAANANHNLGLSKANLIISKVMVDQGPVLKRFRPRAQGRGYPIRKPSCTITVFVKNHPSQNE 131          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_THEEB (50S ribosomal protein L22 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = -3
Query:  115 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 447
            A A+Y+ MS HKVRRV+DQ+RGR+Y + L++L  MPYRAC PI K++ SAAAN  HN+G + A+LVI++A  ++    KR RP+AQGR + I++PTCHIT+ +   +  DE
Sbjct:   11 ACAKYVRMSPHKVRRVLDQLRGRTYRDALIMLRFMPYRACEPITKVLRSAAANATHNLGLDPATLVISQAYADQGPCLKRFRPRAQGRAYQIRKPTCHITIAVAPQNTADE 121          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNY3 (50S ribosomal protein L22 OS=Synechocystis sp. (strain PCC 6803) GN=rplV PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29
Identity = 63/119 (52.94%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  118 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 474
            K +  AEV A ARY+ MS  KVRRV+DQIRGRSY E L+ILE MPY+AC P+ K++ SA AN  HN G   A LV+++A  +   S +R RP+AQGR + I++PTCHITV +     D+
Sbjct:    3 KLDTTAEVKAIARYVRMSPLKVRRVLDQIRGRSYREALIILEFMPYKACEPVLKVLRSAVANAEHNEGLEPADLVVSQAFADGGPSLRRFRPRAQGRAYQIRKPTCHITVAVAPALADN 121          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_MICAN (50S ribosomal protein L22 OS=Microcystis aeruginosa (strain NIES-843) GN=rplV PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.990e-29
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  121 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 456
            EV A ARY+ MS  KVRRV+DQIRGRSY E L+ILE MPYRAC PI K++ SA AN  HN G + A+LV+++A  +   + KR RP+AQGR + I++PTCHITV +   + D
Sbjct:    8 EVKAIARYIRMSPLKVRRVLDQIRGRSYREALIILEFMPYRACDPILKVLRSAVANAEHNEGLDPATLVVSQAFADGGPTLKRFRPRAQGRAYQIRKPTCHITVAVAPSNKD 119          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_CYAA5 (50S ribosomal protein L22 OS=Cyanothece sp. (strain ATCC 51142) GN=rplV PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.599e-29
Identity = 60/106 (56.60%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            E  A ARY+ MS  KVRRV+DQIRGRSY E L+ILE MPYRAC PI KL+ SA AN  HN G +  +LV+++A  +   S +R RP+AQGR + I++PTCHIT+ +
Sbjct:    8 EAKAIARYIRMSPFKVRRVLDQIRGRSYREALIILEFMPYRACEPILKLLRSAVANAEHNQGLDPTTLVVSQAYADGGPSLRRYRPRAQGRAYQIRKPTCHITIAV 113          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_MEDSA9.542e-3251.0850S ribosomal protein L22, chloroplastic OS=Medica... [more]
RK22_MARPO1.246e-3158.4150S ribosomal protein L22, chloroplastic OS=Marcha... [more]
RK22_CHLAT1.378e-3054.1350S ribosomal protein L22, chloroplastic OS=Chloro... [more]
RK22_ANGEV1.800e-3059.2650S ribosomal protein L22, chloroplastic OS=Angiop... [more]
RK22_PEA2.350e-3056.3650S ribosomal protein L22, chloroplastic OS=Pisum ... [more]
RK22_STAPU4.009e-3051.5650S ribosomal protein L22, chloroplastic OS=Staura... [more]
RL22_THEEB1.990e-2952.2550S ribosomal protein L22 OS=Thermosynechococcus e... [more]
RL22_SYNY31.990e-2952.9450S ribosomal protein L22 OS=Synechocystis sp. (st... [more]
RL22_MICAN1.990e-2956.2550S ribosomal protein L22 OS=Microcystis aeruginos... [more]
RL22_CYAA52.599e-2956.6050S ribosomal protein L22 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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