CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_SPIMX (50S ribosomal protein L22, chloroplastic OS=Spirogyra maxima GN=rpl22 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = -3
Query:  139 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 468
            + K EV A  + + MS HKVR+VIDQIRGRSYEE LM+L  MPYRAC PI K++ SAAAN  HN GF +++L I++A+V++    KR RP+AQGR   I +PTC+IT+V+
Sbjct:    6 DSKLEVLALGKNIRMSPHKVRKVIDQIRGRSYEEALMLLTFMPYRACDPILKVVCSAAANASHNFGFRKSTLYISEAKVDKGPLFKRFRPRAQGRGFPISKPTCYITIVI 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PHATR (50S ribosomal protein L22, chloroplastic OS=Phaeodactylum tricornutum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 7.560e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = -3
Query:  136 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 453
            V+A A+Y+ MS HK+RRV+DQIRGRSY+E LMILE +PY A  PI+++I+SAAAN  HN G ++  L+I K   +E    KR RP+AQGR + I +PTCHITVV++
Sbjct:    7 VTAVAKYIRMSPHKIRRVLDQIRGRSYQEALMILEFLPYDAGGPIWQVIHSAAANAKHNSGLDKKKLIIDKVFADEGPKLKRIRPRAQGRAYKILKPTCHITVVMK 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNP2 (50S ribosomal protein L22 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplV PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.874e-29
Identity = 61/108 (56.48%), Postives = 77/108 (71.30%), Query Frame = -3
Query:  139 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 462
            + EV A ARY+ MS  KVRRV+DQIRGRSY E L+ILE MPYRAC P+ K++ SA AN  HN G + A LV++ A  +     KR RP+AQGR + I++PTCHITV +
Sbjct:    6 QTEVKAIARYIRMSPIKVRRVLDQIRGRSYREALIILEFMPYRACEPVLKVLRSAVANAEHNEGLDPADLVVSAAFADAGPVLKRFRPRAQGRAYQIRKPTCHITVAV 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_WELMI (50S ribosomal protein L22, chloroplastic OS=Welwitschia mirabilis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.290e-28
Identity = 63/118 (53.39%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  130 RNKTNK-KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 480
            +  TNK   EV A A+ + MSAHKVRRV+DQIRGR Y +  ++L+ +PY+ACYPIF+L+ SAAAN  +NM F +  L +++AEVNEATS+KR   +A+GR   I++ TCHIT+VL+ +
Sbjct:    2 KTSTNKPNEEVRAFAKNIRMSAHKVRRVMDQIRGRPYAQAYILLKFLPYKACYPIFQLLNSAAANAKNNMSFKK-ELFVSRAEVNEATSSKRFHFRAKGRSFCIRKQTCHITIVLKQL 118          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_HUPLU (50S ribosomal protein L22, chloroplastic OS=Huperzia lucidula GN=rpl22 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.290e-28
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = -3
Query:  115 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDE 477
            N +NK  EV    + +HMSA+K+RRV++QIRG SY E +MILE MPYRACYP+ KL+ +AA N  H MG  +A L +++ +V+  + AKR R +AQGR + I +PTCHIT++L+  S+  E
Sbjct:    5 NDSNK--EVKIFVKNIHMSAYKLRRVVNQIRGHSYGEAVMILEFMPYRACYPVLKLVSNAAENANHKMGLRKADLFVSEVKVDAGSFAKRLRLRAQGRNYPIHKPTCHITIILKKKSVYKE 123          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_NOSP7 (50S ribosomal protein L22 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplV PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-28
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A AR++ +SA+KVRRV+DQIRGRSY E L+ILE MPYRA  PI K++ SAAAN  HN G +   LVI +A  ++    KR +P+AQGR + I++PTCHITV +
Sbjct:    7 EVKAIARFIRISAYKVRRVLDQIRGRSYREALIILEFMPYRATEPILKVLRSAAANAEHNAGLDRTQLVITQAYADQGPPLKRFQPRAQGRAYQIRKPTCHITVAV 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_CHAVU (50S ribosomal protein L22, chloroplastic OS=Chara vulgaris GN=rpl22 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.752e-28
Identity = 59/116 (50.86%), Postives = 86/116 (74.14%), Query Frame = -3
Query:  136 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLR 483
            N+ + +    V AS + L++S HK R+V++QIRG SYE+ LMILE MPYRAC PI +LI SAA+N  HN+G  + +L I++A+V+E T+ KR +P+AQGR + I +PTCHIT+ ++
Sbjct:    2 NQKQEDFSPSVKASLKSLNISFHKTRKVVNQIRGCSYEKALMILEFMPYRACKPITQLISSAASNANHNLGLKKKNLFISEAKVDEGTTIKRFQPRAQGRAYSIHKPTCHITIGMK 117          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_MESVI (50S ribosomal protein L22, chloroplastic OS=Mesostigma viride GN=rpl22 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.901e-28
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  130 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 456
            +V A AR + MS  KVRRV+DQIRGRSYEE LMIL+ MPYRAC PI K++YSAAAN  +N+G  +ASL I++A+V++    KR RP+AQGR   I++PTC I++ ++ +
Sbjct:   10 KVKAVARGVFMSPQKVRRVLDQIRGRSYEEALMILQFMPYRACEPISKVLYSAAANAKNNLGLTKASLSISEAKVDKGPILKRFRPRAQGRGFPIRKPTCQISITVQSI 118          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNP6 (50S ribosomal protein L22 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplV PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A ARY+ MS  KVRRV+DQ+RGRSY E L++LE MPY++C PI K++ SA AN  HN G +   LVI++A  +   S KR RP+AQGR + I++ TCHIT+ +
Sbjct:    8 EVKAIARYIRMSPSKVRRVLDQLRGRSYREALILLEFMPYKSCEPILKVLRSAVANAEHNQGLDPTQLVISQAYADMGPSLKRFRPRAQGRAYQIRKQTCHITIAV 113          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_SYNE7 (50S ribosomal protein L22 OS=Synechococcus elongatus (strain PCC 7942) GN=rplV PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.426e-27
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A ARY+ MS  KVRRV+DQ+RGRSY E L++LE MPY++C PI K++ SA AN  HN G +   LVI++A  +   S KR RP+AQGR + I++ TCHIT+ +
Sbjct:    8 EVKAIARYIRMSPSKVRRVLDQLRGRSYREALILLEFMPYKSCEPILKVLRSAVANAEHNQGLDPTQLVISQAYADMGPSLKRFRPRAQGRAYQIRKQTCHITIAV 113          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_SPIMX3.394e-2956.3650S ribosomal protein L22, chloroplastic OS=Spirog... [more]
RK22_PHATR7.560e-2956.6050S ribosomal protein L22, chloroplastic OS=Phaeod... [more]
RL22_SYNP29.874e-2956.4850S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RK22_WELMI1.290e-2853.3950S ribosomal protein L22, chloroplastic OS=Welwit... [more]
RK22_HUPLU1.290e-2850.4150S ribosomal protein L22, chloroplastic OS=Huperz... [more]
RL22_NOSP72.200e-2856.6050S ribosomal protein L22 OS=Nostoc punctiforme (s... [more]
RK22_CHAVU3.752e-2850.8650S ribosomal protein L22, chloroplastic OS=Chara ... [more]
RK22_MESVI4.901e-2855.9650S ribosomal protein L22, chloroplastic OS=Mesost... [more]
RL22_SYNP61.426e-2753.7750S ribosomal protein L22 OS=Synechococcus sp. (st... [more]
RL22_SYNE71.426e-2753.7750S ribosomal protein L22 OS=Synechococcus elongat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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