CF832667

Overview
NameCF832667
Unique NameCF832667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ODOSI (50S ribosomal protein L22, chloroplastic OS=Odontella sinensis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.862e-27
Identity = 57/109 (52.29%), Postives = 80/109 (73.39%), Query Frame = -3
Query:  127 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 453
            V A A+Y+ MS HKVRRV++QIRGRSY+E LMILE +PY A  P++++++SAAAN  +N G ++  L+I +   NE    KR RP+AQGR + I +PTCHITV+++  S
Sbjct:    7 VKAVAKYIRMSPHKVRRVLNQIRGRSYQEALMILEFLPYDAGGPVWQVVHSAAANAKNNYGLDKKKLIIEEVFANEGPKLKRIRPRAQGRAYSILKPTCHITVIVKGTS 115          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_AGRST (50S ribosomal protein L22, chloroplastic OS=Agrostis stolonifera GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.149e-27
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  K +RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T  K+ RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIHMSVFKAQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMKKFRPRARGRSFPIKKSMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_TRIEI (50S ribosomal protein L22 OS=Trichodesmium erythraeum (strain IMS101) GN=rplV PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = -3
Query:  118 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 456
            EV A ARY+ MS  KVRRV+DQIRG SY E L+ILE MPYR+C PI K++ SA AN  +N G +  +LVI+KA  ++     R RP+AQGR + I++PTCHITV +  + +DD
Sbjct:    8 EVKAIARYIRMSPFKVRRVLDQIRGISYREALIILEFMPYRSCVPIRKVLCSAVANAENNKGIDPDTLVISKAFADQGPCLPRYRPRAQGRAYKIRKPTCHITVAVASL-VDD 119          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ANAVT (50S ribosomal protein L22 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplV PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A AR++ MS +KVRRV+DQIRG SY E L+ILE MPYRA  P+  L+ SAAAN  HN G + A LVI +A  ++    KR +P+AQGR + I++PTCHIT+ +
Sbjct:    7 EVKAIARFIRMSPYKVRRVLDQIRGLSYREALIILEFMPYRATEPVLTLLRSAAANAEHNAGLDRAELVITQAYADQGPVLKRFQPRAQGRAYQIRKPTCHITLAV 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RL22_ANASP (50S ribosomal protein L22 OS=Anabaena sp. (strain PCC 7120) GN=rplV PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  139 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 456
            EV A AR++ MS +KVRRV+DQIRG SY E L+ILE MPYRA  P+  L+ SAAAN  HN G + A LVI +A  ++    KR +P+AQGR + I++PTCHIT+ +
Sbjct:    7 EVKAIARFIRMSPYKVRRVLDQIRGLSYREALIILEFMPYRATEPVLTLLRSAAANAEHNAGLDRAELVITQAYADQGPVLKRFQPRAQGRAYQIRKPTCHITLAV 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_PORPU (50S ribosomal protein L22, chloroplastic OS=Porphyra purpurea GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 58/111 (52.25%), Postives = 75/111 (67.57%), Query Frame = -3
Query:  145 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 477
            N T    E  A  +Y+ +S HKVRRV+DQIRGR Y+E L+ILE MPYRACY I +++ SA AN  HN G N+  L I KA  ++  + KR +P+AQGR   I +PTCHIT+
Sbjct:    2 NITKNLKETKAVGKYIRLSPHKVRRVLDQIRGRKYQEALIILEFMPYRACYHIKQILESAGANAEHNNGLNKNQLFITKAFADKGPTLKRFQPRAQGRAFPIHKPTCHITL 112          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ORYSJ (50S ribosomal protein L22, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  KV+RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ORYSI (50S ribosomal protein L22, chloroplastic OS=Oryza sativa subsp. indica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  KV+RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ORYSA (50S ribosomal protein L22, chloroplastic OS=Oryza sativa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  KV+RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVL 142          
BLAST of CF832667 vs. ExPASy Swiss-Prot
Match: RK22_ORYNI (50S ribosomal protein L22, chloroplastic OS=Oryza nivara GN=rpl22 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  139 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 465
            K   V  + + +HMS  KV+RV+D+IR R YEET+MIL LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR   IK+  CHIT+VL
Sbjct:   34 KFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMILNLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGRSSPIKKTMCHITIVL 142          
The following BLAST results are available for this feature:
BLAST of CF832667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_ODOSI1.862e-2752.2950S ribosomal protein L22, chloroplastic OS=Odonte... [more]
RK22_AGRST4.149e-2755.0550S ribosomal protein L22, chloroplastic OS=Agrost... [more]
RL22_TRIEI5.418e-2753.9850S ribosomal protein L22 OS=Trichodesmium erythra... [more]
RL22_ANAVT5.418e-2754.7250S ribosomal protein L22 OS=Anabaena variabilis (... [more]
RL22_ANASP5.418e-2754.7250S ribosomal protein L22 OS=Anabaena sp. (strain ... [more]
RK22_PORPU5.418e-2752.2550S ribosomal protein L22, chloroplastic OS=Porphy... [more]
RK22_ORYSJ5.418e-2755.0550S ribosomal protein L22, chloroplastic OS=Oryza ... [more]
RK22_ORYSI5.418e-2755.0550S ribosomal protein L22, chloroplastic OS=Oryza ... [more]
RK22_ORYSA5.418e-2755.0550S ribosomal protein L22, chloroplastic OS=Oryza ... [more]
RK22_ORYNI5.418e-2755.0550S ribosomal protein L22, chloroplastic OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832667 ID=CF832667; Name=CF832667; organism=Citrus sinensis; type=EST; length=500bp
TTTTTTTTTTTTTTTAAAAAAACAAAGAACGGGACGTTACTCATTCCAAA
AACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAAT
TAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAGT
GATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTAG
GTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGATG
ACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCGC
AGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGCT
CCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAATT
ACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAGA
CACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATTC
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