CF832668
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_SYNR3 (50S ribosomal protein L22 OS=Synechococcus sp. (strain RCC307) GN=rplV PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24 Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 31 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 T + A R++ S KVRRV+DQIRGRSY + L++LE MPYR+ PI K++ SA AN HNMG + ++LV++ A + + KR RP+AQGR + IK+ TCHI++ Sbjct: 3 TTASPQALAHGRFVRGSVSKVRRVLDQIRGRSYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNMGLDPSNLVVSMASADMGPTMKRYRPRAQGRAYQIKKQTCHISI 111
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROM2 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplV PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24 Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1 Query: 28 KTNKKAEVS-ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 KT++ +++ A Y+ SA KVRRV+DQIRGRSY + L++LE MPYR+ PI K++ SA AN HN+G + ++L+I+ A N KR RP+AQGR IK+ TCHI++ Sbjct: 3 KTSETTKIAIAHGNYIRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSTLIISSAWANSGPVMKRYRPRAQGRAFSIKKQTCHISI 113
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_EMIHU (50S ribosomal protein L22, chloroplastic OS=Emiliania huxleyi GN=rpl22 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24 Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 1 Query: 46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 363 E A ARY+ M +KVRRV+ QI G+SY E L++LE +PY++C PI K++ SA AN +N+G++ LVI KA ++ KR RP+AQGR + I +PT HIT+V+ Sbjct: 10 ETMAVARYVRMGPNKVRRVLRQITGKSYSEALLLLEFLPYKSCDPIIKVLRSAVANAKNNLGYDTTKLVIKKAFADQGPVMKRFRPRAQGRAYRILKPTSHITIVV 115
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_SYNPW (50S ribosomal protein L22 OS=Synechococcus sp. (strain WH7803) GN=rplV PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.729e-24 Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 55 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 363 A R++ S KVRRV+DQIRGR+Y + L++LE MPYR+ PI K++ SA AN HN+G + ++LVI++A + S KR RP+AQGR + IK+ TCHI++ + Sbjct: 13 AHGRFIRGSVSKVRRVLDQIRGRTYRDALIMLEFMPYRSTGPITKVLRSAVANAEHNLGLDPSTLVISQASADMGPSMKRYRPRAQGRAYAIKKQTCHISIAV 115
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROM5 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplV PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 9.729e-24 Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 1 Query: 37 KKAEVSASA----RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 KK+E++ A +Y+ SA KVRRV+DQIRG+SY + L++LE MPYR+ PI K++ SA AN HN+G +SLVI+ A + KR RP+AQGR IK+ TCHI++ Sbjct: 3 KKSEMTKKAIAHGKYIRGSASKVRRVLDQIRGKSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMEPSSLVISSASADNGPVMKRFRPRAQGRAFSIKKQTCHISI 113
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROM9 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplV PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.271e-23 Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1 Query: 19 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 N ++T K A A Y+ SA KVRRV+DQIRGRSY + L++LE MPYR+ PI K++ SA AN HN G + ++L+I+ A N KR RP+AQGR IK+ TCHI++ Sbjct: 3 NTSETTKTA--IAHGNYVRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNYGMDPSTLIISSAWANNGPVMKRYRPRAQGRAFSIKKQTCHISI 113
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROMP (50S ribosomal protein L22 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplV PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23 Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1 Query: 55 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 A +Y+ SA KVRRV+DQIRG+SY + L++LE MPYR+ PI K++ SA AN HN+G + +SLVI+ A + KR RP+AQGR IK+ TCHI++ Sbjct: 13 AHGKYIRGSASKVRRVLDQIRGKSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSSLVISSASADNGPVMKRFRPRAQGRAFSIKKQTCHISI 113
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROM0 (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplV PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23 Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 55 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 A Y+ SA KVRRV+DQIRGRSY + L++LE MPYR+ PI K++ SA AN HN+G + ++LVI+ A N KR RP+AQGR IK+ TCHI++ Sbjct: 13 AHGNYVRGSASKVRRVLDQIRGRSYRDALIMLEFMPYRSTDPITKVLRSAVANAEHNLGMDPSTLVISSAWANSGPVMKRYRPRAQGRAFSIKKQTCHISI 113
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RK22_PAUCH (50S ribosomal protein L22, organellar chromatophore OS=Paulinella chromatophora GN=rpl22 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 2.831e-23 Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 1 Query: 43 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 ++ A R + S KVRRV+DQIRGRSY E L++LE MPYR+ PI K++ SA AN HN+G + ++L+I +A + +S KR RP+AQGR IK+ TCHI++ Sbjct: 8 SQALAHGRRIKGSVSKVRRVLDQIRGRSYREALIMLEFMPYRSTAPITKVLRSAVANAEHNLGLDPSTLIINRATADMGSSMKRYRPRAQGRAFAIKKQTCHISI 112
BLAST of CF832668 vs. ExPASy Swiss-Prot
Match: RL22_PROMT (50S ribosomal protein L22 OS=Prochlorococcus marinus (strain NATL2A) GN=rplV PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.697e-23 Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 31 TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 357 ++ K A RY+ SA KVRRV+DQIRGR+Y + L++LE MPYR+ PI K++ SA AN +N+G + +SL+I+ A + KR RP+AQGR IK+ TCHI++ Sbjct: 4 SSTKTTAQAHGRYIRGSASKVRRVLDQIRGRTYRDALIMLEFMPYRSTEPITKVLRSAVANAENNLGLDPSSLMISTATADMGPPMKRYRPRAQGRAFAIKKQTCHISI 112 The following BLAST results are available for this feature:
BLAST of CF832668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832668 ID=CF832668; Name=CF832668; organism=Citrus sinensis; type=EST; length=503bpback to top |