CF832669

Overview
NameCF832669
Unique NameCF832669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_POPTR (50S ribosomal protein L22, chloroplastic OS=Populus trichocarpa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.496e-42
Identity = 81/113 (71.68%), Postives = 97/113 (85.84%), Query Frame = -3
Query:  119 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 457
            E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HNMG NEASLVI+KAEVNE  + K+ +P+A+GR ++IKR TCHI++VL D+S ++
Sbjct:   11 EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGLNEASLVISKAEVNEGATMKKFKPRARGRSYLIKRQTCHISIVLEDISYEE 123          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_MANES (50S ribosomal protein L22, chloroplastic OS=Manihot esculenta GN=rpl22 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.788e-42
Identity = 81/115 (70.43%), Postives = 100/115 (86.96%), Query Frame = -3
Query:  113 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 457
            EV A  +++ MS HK RR+IDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAAN  HNMGFNEA+L+I+KAEVNE T+ K+ +P+A+GR + IKR TCHI++VL+++SL +EY
Sbjct:   13 EVYALGQHICMSPHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANASHNMGFNEANLIISKAEVNEGTTVKKLKPQARGRGYPIKRSTCHISIVLKNISLYEEY 127          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_SOLLC (50S ribosomal protein L22, chloroplastic OS=Solanum lycopersicum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.328e-41
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NMG +E +LVI+KAEVNE T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASYNMGSSETNLVISKAEVNEGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_SOLBU (50S ribosomal protein L22, chloroplastic OS=Solanum bulbocastanum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.328e-41
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NMG +E +LVI+KAEVNE T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASYNMGSSETNLVISKAEVNEGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_NICTO (50S ribosomal protein L22, chloroplastic OS=Nicotiana tomentosiformis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.959e-41
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A   ++ MSA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAAAN  +NMG +EA+LVI+KAEVN  T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASYNMGSSEANLVISKAEVNGGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_LACSA (50S ribosomal protein L22, chloroplastic OS=Lactuca sativa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.048e-41
Identity = 80/116 (68.97%), Postives = 97/116 (83.62%), Query Frame = -3
Query:  119 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 466
            +  EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN   NMG NE +LVI+KAEVNE T  KR +P+A+GR   I++PTCHIT+V++D+SLD+
Sbjct:    5 RTTEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASFNMGSNEVNLVISKAEVNEGTIVKRLKPRARGRSFAIQKPTCHITIVMKDISLDE 120          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_HELAN (50S ribosomal protein L22, chloroplastic OS=Helianthus annuus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.593e-41
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = -3
Query:  119 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 466
            +  EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN   NMG NEA+LVI+KAEVN+ T  KR +P+A+GR   I++PTCHIT+V++D+SLD+
Sbjct:    5 RTTEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASSNMGSNEANLVISKAEVNKGTIMKRLKPRARGRSFAIQKPTCHITIVMKDISLDE 120          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_TOBAC (50S ribosomal protein L22, chloroplastic OS=Nicotiana tabacum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.610e-41
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A   ++ MSA K RRVI+QIRGRSYEETLMILELMPYRACYPI KLIYSAAAN  +NMG +EA+LVI+KAEVN  T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVINQIRGRSYEETLMILELMPYRACYPILKLIYSAAANASYNMGSSEANLVISKAEVNGGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_NICSY (50S ribosomal protein L22, chloroplastic OS=Nicotiana sylvestris GN=rpl22 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.610e-41
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A   ++ MSA K RRVI+QIRGRSYEETLMILELMPYRACYPI KLIYSAAAN  +NMG +EA+LVI+KAEVN  T+ K+ +P+A+GR   IKR TCHIT+V++D+SLDDEY
Sbjct:    5 KKTEVYALGEHISMSADKARRVINQIRGRSYEETLMILELMPYRACYPILKLIYSAAANASYNMGSSEANLVISKAEVNGGTTVKKLKPRARGRSFPIKRSTCHITIVMKDISLDDEY 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_CERDE (50S ribosomal protein L22, chloroplastic OS=Ceratophyllum demersum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.610e-41
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = -3
Query:  134 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 475
            K   + EV A A+Y+HMSAHK RRV+DQIRGRSYEETLMILELMPYRA YPIFKL+YSAAAN  HNMGFNEA   I+KAEVNE    K+  P+A+GR + IKR TCHIT+VL+D
Sbjct:    3 KRKSRTEVKAVAQYIHMSAHKARRVVDQIRGRSYEETLMILELMPYRASYPIFKLVYSAAANANHNMGFNEADSFISKAEVNEGVIVKKLNPQARGRSYTIKRSTCHITIVLKD 116          
The following BLAST results are available for this feature:
BLAST of CF832669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_POPTR3.496e-4271.6850S ribosomal protein L22, chloroplastic OS=Populu... [more]
RK22_MANES7.788e-4270.4350S ribosomal protein L22, chloroplastic OS=Maniho... [more]
RK22_SOLLC1.328e-4169.4950S ribosomal protein L22, chloroplastic OS=Solanu... [more]
RK22_SOLBU1.328e-4169.4950S ribosomal protein L22, chloroplastic OS=Solanu... [more]
RK22_NICTO2.959e-4169.4950S ribosomal protein L22, chloroplastic OS=Nicoti... [more]
RK22_LACSA5.048e-4168.9750S ribosomal protein L22, chloroplastic OS=Lactuc... [more]
RK22_HELAN6.593e-4168.9750S ribosomal protein L22, chloroplastic OS=Helian... [more]
RK22_TOBAC8.610e-4169.4950S ribosomal protein L22, chloroplastic OS=Nicoti... [more]
RK22_NICSY8.610e-4169.4950S ribosomal protein L22, chloroplastic OS=Nicoti... [more]
RK22_CERDE8.610e-4170.1850S ribosomal protein L22, chloroplastic OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832669 ID=CF832669; Name=CF832669; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTTAAAAAAAACAAAGAACGGGACGTTACTCATTCGAA
AAACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAA
TTAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAG
TGATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTA
GGTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGAT
GACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCG
CAGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGC
TCCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAAT
TACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAG
ACACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATT
C
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