CF832669

Overview
NameCF832669
Unique NameCF832669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_FAGEA (50S ribosomal protein L22, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl22 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.243e-39
Identity = 77/123 (62.60%), Postives = 97/123 (78.86%), Query Frame = -3
Query:  113 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 481
            R K     EVSA  +Y+ MS HK RRVIDQIRGRSY+ETLMILELMPYRACYPIFK+IYSAAAN  HN GF +  L++ KAEVN+  + K+ +P+A+GR ++IK+PTCHI+VVL+D+S  + Y
Sbjct:    2 RKKKKSLTEVSALGQYIPMSVHKARRVIDQIRGRSYKETLMILELMPYRACYPIFKIIYSAAANAKHNKGFEKEDLLVWKAEVNKGPTRKKLKPRARGRSYLIKKPTCHISVVLKDISYYEAY 124          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OLIPU (50S ribosomal protein L22, chloroplastic OS=Olimarabidopsis pumila GN=rpl22 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  113 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 481
            + K      V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S   +Y
Sbjct:    4 KRKKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_GUIAB (50S ribosomal protein L22, chloroplastic OS=Guizotia abyssinica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 78/116 (67.24%), Postives = 97/116 (83.62%), Query Frame = -3
Query:  119 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 466
            +  EV A  +++ MSAHK RRVIDQIRGRSYEETL+ILELMPYRACYPIFKL+YSAAAN   NMG NEA+LVI+KAEVN+ T  KR + +A+GR   I++PTCHIT+V++D+SLD+
Sbjct:    5 RTTEVYALGQHISMSAHKARRVIDQIRGRSYEETLIILELMPYRACYPIFKLVYSAAANASSNMGSNEANLVISKAEVNKGTIMKRLKHRARGRSFAIQKPTCHITIVMKDISLDE 120          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_CRUWA (50S ribosomal protein L22, chloroplastic OS=Crucihimalaya wallichii GN=rpl22 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 77/123 (62.60%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  113 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 481
            + K      V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S   +Y
Sbjct:    4 KRKKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_CAPBU (50S ribosomal protein L22, chloroplastic OS=Capsella bursa-pastoris GN=rpl22 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.121e-39
Identity = 79/126 (62.70%), Postives = 96/126 (76.19%), Query Frame = -3
Query:  113 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL---DDEY 481
            + K     EV A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S    ++EY
Sbjct:    4 KRKKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQNEEY 129          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_ARAHI (50S ribosomal protein L22, chloroplastic OS=Arabis hirsuta GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.770e-39
Identity = 79/124 (63.71%), Postives = 94/124 (75.81%), Query Frame = -3
Query:  113 RNKTNKK-AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 481
            +NK  K    V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D S   +Y
Sbjct:    3 KNKKQKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDTSFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_NASOF (50S ribosomal protein L22, chloroplastic OS=Nasturtium officinale GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.618e-39
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = -3
Query:  113 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 475
            K      V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S   +Y
Sbjct:    6 KKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_BARVE (50S ribosomal protein L22, chloroplastic OS=Barbarea verna GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.618e-39
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = -3
Query:  113 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 475
            K      V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D+S   +Y
Sbjct:    6 KKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDISFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_NANDO (50S ribosomal protein L22, chloroplastic OS=Nandina domestica GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.725e-39
Identity = 75/119 (63.03%), Postives = 97/119 (81.51%), Query Frame = -3
Query:  107 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAV 463
            + EV A  +++ MSAHK RRVIDQIRGR Y+E LMILELMPYRACYPIFKL+YSAAAN  +N GFN+ +L+I++AEVNE T  K+ +P+A+GR + IKRPTCHIT+VL+D+S D  + +
Sbjct:    4 EVEVYALGQHICMSAHKARRVIDQIRGRPYDEILMILELMPYRACYPIFKLVYSAAANATNNKGFNKTALIISQAEVNEGTVVKKLKPRARGRSYPIKRPTCHITIVLQDISKDKNFYI 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_DRANE (50S ribosomal protein L22, chloroplastic OS=Draba nemorosa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.725e-39
Identity = 79/124 (63.71%), Postives = 94/124 (75.81%), Query Frame = -3
Query:  113 RNKTNKK-AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 481
            +NK  K    V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN G  E +LVI+KAEVN+  + K+ +P+A+GR + IKR TCHIT+VL D SL  +Y
Sbjct:    3 KNKKKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGLKETNLVISKAEVNQGNTVKKLKPRARGRSYPIKRSTCHITIVLEDTSLYQQY 126          
The following BLAST results are available for this feature:
BLAST of CF832669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_FAGEA1.243e-3962.6050S ribosomal protein L22, chloroplastic OS=Fagopy... [more]
RK22_OLIPU2.121e-3962.6050S ribosomal protein L22, chloroplastic OS=Olimar... [more]
RK22_GUIAB2.121e-3967.2450S ribosomal protein L22, chloroplastic OS=Guizot... [more]
RK22_CRUWA2.121e-3962.6050S ribosomal protein L22, chloroplastic OS=Crucih... [more]
RK22_CAPBU2.121e-3962.7050S ribosomal protein L22, chloroplastic OS=Capsel... [more]
RK22_ARAHI2.770e-3963.7150S ribosomal protein L22, chloroplastic OS=Arabis... [more]
RK22_NASOF3.618e-3963.6450S ribosomal protein L22, chloroplastic OS=Nastur... [more]
RK22_BARVE3.618e-3963.6450S ribosomal protein L22, chloroplastic OS=Barbar... [more]
RK22_NANDO4.725e-3963.0350S ribosomal protein L22, chloroplastic OS=Nandin... [more]
RK22_DRANE4.725e-3963.7150S ribosomal protein L22, chloroplastic OS=Draba ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832669 ID=CF832669; Name=CF832669; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTTAAAAAAAACAAAGAACGGGACGTTACTCATTCGAA
AAACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAA
TTAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAG
TGATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTA
GGTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGAT
GACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCG
CAGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGC
TCCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAAT
TACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAG
ACACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATT
C
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