CF832669

Overview
NameCF832669
Unique NameCF832669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OROMI (50S ribosomal protein L22, plastid OS=Orobanche minor GN=rpl22 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.053e-38
Identity = 79/120 (65.83%), Postives = 99/120 (82.50%), Query Frame = -3
Query:  122 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLD 481
            +NKT KK EV A  R++ +SA K RRVIDQIRGRSYEETLMILELMPYRACYPI KL+YSAA+N  ++M   E +LVI+KAEVNE T  K+ +P+A+GR ++IKR TCHIT+V++D+SLD
Sbjct:    3 KNKT-KKTEVYALCRHISLSADKARRVIDQIRGRSYEETLMILELMPYRACYPILKLVYSAASNAAYSMDSAEVNLVISKAEVNEGTITKKFKPRARGRSYVIKRTTCHITIVVKDISLD 121          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_JASNU (50S ribosomal protein L22, chloroplastic OS=Jasminum nudiflorum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.375e-38
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = -3
Query:  113 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 466
            KK EV A  R++ +SA K RRVIDQIRGRSYEETLMILELMPYRAC PI KL+YSAAAN   NMG N+A+LVI+ AEVNE T+ K+ +P+A+G  + IKR TCHIT+ ++D+SLDDEY
Sbjct:    4 KKTEVYALRRHISLSADKARRVIDQIRGRSYEETLMILELMPYRACSPISKLVYSAAANANSNMGSNKANLVISNAEVNEGTTRKKFKPRARGHCYPIKRRTCHITIGVKDISLDDEY 121          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_SPIOL (50S ribosomal protein L22, chloroplastic OS=Spinacia oleracea GN=rpl22 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.795e-38
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = -3
Query:  113 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 457
            E++     + MS  K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIYSAAAN  HN  FN+A+L+I+KAEVN+  + K+ +P+A+GR +MIKRPTCHIT+VLRD++  D Y
Sbjct:   31 EITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMIKRPTCHITIVLRDITHFDSY 145          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_LEPVR (50S ribosomal protein L22, chloroplastic OS=Lepidium virginicum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.795e-38
Identity = 76/121 (62.81%), Postives = 91/121 (75.21%), Query Frame = -3
Query:  113 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEY 475
            K      V A  +Y+ MSAHK RRVIDQIRGRSYEE LMILELMPYR CYPIFKL+YSAAAN  HN GF E +LVI+KAEVN+  + K+ +P+A+GR   IKR TCHIT+V+ D+S   +Y
Sbjct:    6 KKKSYTSVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAAANASHNKGFKETNLVISKAEVNQGNTVKKLKPRARGRSFPIKRSTCHITIVVEDISFYQQY 126          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_CALFG (50S ribosomal protein L22, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl22 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.822e-38
Identity = 76/123 (61.79%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  128 SPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 496
            S    + K +   +V A A+++ MSAHK RRV+DQIRGRSY ETLM+LELMPYRA YPIFKL+YSAAAN  HN  FNEA   I+KAEVN  T  K+ +P+A+GR + IKRPTCHIT+VL+D S
Sbjct:    3 SKKKQKMKRSSSTQVQALAQHISMSAHKARRVVDQIRGRSYAETLMLLELMPYRASYPIFKLVYSAAANASHNKSFNEADSFISKAEVNGGTIVKKFKPRAKGRSYPIKRPTCHITIVLKDRS 125          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_DRIGR (50S ribosomal protein L22, chloroplastic OS=Drimys granadensis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.910e-38
Identity = 75/119 (63.03%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  128 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 484
            +R K +   +V A A+++ MSAHK RRVIDQIRGRSYE+TLM+LELMPYRA YPI KL+YSAAAN  HN GFN+A LVI++AEVN  T  K+ +P+A+G  + IKRPTCHI +VL+D S
Sbjct:    4 HRKKRSSSTQVQALAQHICMSAHKARRVIDQIRGRSYEKTLMLLELMPYRASYPILKLVYSAAANASHNKGFNKADLVISQAEVNGGTIIKKLKPRARGHSYPIKRPTCHINIVLKDQS 122          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OENPA (50S ribosomal protein L22, chloroplastic OS=Oenothera parviflora GN=rpl22 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  119 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 475
            K     EV A  +Y+ MSA K RRVIDQIRGRSYEETLM+L LMPYRAC PI KL+ SAAAN  HNM FNEA+LVI+KAEVNE T+ K+ +P+A+GR + I+RPTCHI +VL+D S D+
Sbjct:    3 KKKTYGEVYALGQYISMSAPKARRVIDQIRGRSYEETLMLLALMPYRACDPILKLVNSAAANARHNMSFNEATLVISKAEVNEGTTVKKLKPRARGRSYPIRRPTCHIRIVLQDTSFDE 121          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OENGL (50S ribosomal protein L22, chloroplastic OS=Oenothera glazioviana GN=rpl22 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  119 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 475
            K     EV A  +Y+ MSA K RRVIDQIRGRSYEETLM+L LMPYRAC PI KL+ SAAAN  HNM FNEA+LVI+KAEVNE T+ K+ +P+A+GR + I+RPTCHI +VL+D S D+
Sbjct:    3 KKKTYGEVYALGQYISMSAPKARRVIDQIRGRSYEETLMLLALMPYRACDPILKLVNSAAANARHNMSFNEATLVISKAEVNEGTTVKKLKPRARGRSYPIRRPTCHIRIVLQDTSFDE 121          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OENEH (50S ribosomal protein L22, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl22 PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  119 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 475
            K     EV A  +Y+ MSA K RRVIDQIRGRSYEETLM+L LMPYRAC PI KL+ SAAAN  HNM FNEA+LVI+KAEVNE T+ K+ +P+A+GR + I+RPTCHI +VL+D S D+
Sbjct:    3 KKKTYGEVYALGQYISMSAPKARRVIDQIRGRSYEETLMLLALMPYRACDPILKLVNSAAANARHNMSFNEATLVISKAEVNEGTTVKKLKPRARGRSYPIRRPTCHIRIVLQDTSFDE 121          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RK22_OENBI (50S ribosomal protein L22, chloroplastic OS=Oenothera biennis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.164e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -3
Query:  119 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 475
            K     EV A  +Y+ MSA K RRVIDQIRGRSYEETLM+L LMPYRAC PI KL+ SAAAN  HNM FNEA+LVI+KAEVNE T+ K+ +P+A+GR + I+RPTCHI +VL+D S D+
Sbjct:    3 KKKTYGEVYALGQYISMSAPKARRVIDQIRGRSYEETLMLLALMPYRACDPILKLVNSAAANARHNMSFNEATLVISKAEVNEGTTVKKLKPRARGRSYPIRRPTCHIRIVLQDTSFDE 121          
The following BLAST results are available for this feature:
BLAST of CF832669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_OROMI1.053e-3865.8350S ribosomal protein L22, plastid OS=Orobanche mi... [more]
RK22_JASNU1.375e-3866.9550S ribosomal protein L22, chloroplastic OS=Jasmin... [more]
RK22_SPIOL1.795e-3866.0950S ribosomal protein L22, chloroplastic OS=Spinac... [more]
RK22_LEPVR1.795e-3862.8150S ribosomal protein L22, chloroplastic OS=Lepidi... [more]
RK22_CALFG6.822e-3861.7950S ribosomal protein L22, chloroplastic OS=Calyca... [more]
RK22_DRIGR8.910e-3863.0350S ribosomal protein L22, chloroplastic OS=Drimys... [more]
RK22_OENPA1.164e-3764.7150S ribosomal protein L22, chloroplastic OS=Oenoth... [more]
RK22_OENGL1.164e-3764.7150S ribosomal protein L22, chloroplastic OS=Oenoth... [more]
RK22_OENEH1.164e-3764.7150S ribosomal protein L22, chloroplastic OS=Oenoth... [more]
RK22_OENBI1.164e-3764.7150S ribosomal protein L22, chloroplastic OS=Oenoth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832669 ID=CF832669; Name=CF832669; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTTAAAAAAAACAAAGAACGGGACGTTACTCATTCGAA
AAACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAA
TTAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAG
TGATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTA
GGTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGAT
GACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCG
CAGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGC
TCCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAAT
TACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAG
ACACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATT
C
back to top