CF832669

Overview
NameCF832669
Unique NameCF832669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BORPE (50S ribosomal protein L22 OS=Bordetella pertussis GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            E +A  R +H+SA K R V D IRG+S  + L IL   P +A   + K + SA AN  HN G +   L +    V++A S KR   +A+GR + I++ TCHITV
Sbjct:    2 ETTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHITV 105          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BORPA (50S ribosomal protein L22 OS=Bordetella parapertussis GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            E +A  R +H+SA K R V D IRG+S  + L IL   P +A   + K + SA AN  HN G +   L +    V++A S KR   +A+GR + I++ TCHITV
Sbjct:    2 ETTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHITV 105          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BORBR (50S ribosomal protein L22 OS=Bordetella bronchiseptica GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            E +A  R +H+SA K R V D IRG+S  + L IL   P +A   + K + SA AN  HN G +   L +    V++A S KR   +A+GR + I++ TCHITV
Sbjct:    2 ETTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHITV 105          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BORA1 (50S ribosomal protein L22 OS=Bordetella avium (strain 197N) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            E +A  R +H+SA K R V D IRG+S  + L IL   P +A   + K + SA AN  HN G +   L +    V++A S KR   +A+GR + I++ TCHITV
Sbjct:    2 ETTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQSMKRFSARAKGRGNRIEKQTCHITV 105          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BACST (50S ribosomal protein L22 OS=Bacillus stearothermophilus GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 43/108 (39.81%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            +  A AR + ++  K R VID IRG+   E   IL   P  A   I K++ SA AN  HN   +  +LVI++A V+E  + KR RP+A GR   I + T HIT+V+ +
Sbjct:    2 QAKAVARTVRIAPRKARLVIDLIRGKEVGERFAILRHTPKAASPIIEKVLKSAVANAEHNYDMDVNNLVISQAYVDEGPTLKRFRPRAMGRASAINKRTSHITIVVSE 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BACHD (50S ribosomal protein L22 OS=Bacillus halodurans GN=rplV PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            +  A A+ + ++  K R VID IRG+   E + IL+  P  A   I K++ SA AN  HN      +LVI++A V+E  + KR RP+A GR   I + T HIT+V+ +
Sbjct:    2 QAKAVAKQVRIAPRKARLVIDLIRGKQVGEAIAILKHTPKAASPIIEKVLNSAIANAEHNYEMEPNNLVISEAFVDEGVTLKRFRPRAMGRASRINKRTSHITIVVTE 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_KLEP7 (50S ribosomal protein L22 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETLAQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_KLEP3 (50S ribosomal protein L22 OS=Klebsiella pneumoniae (strain 342) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 45/108 (41.67%), Postives = 59/108 (54.63%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L +AK  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETLAQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVAKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_DEHE1 (50S ribosomal protein L22 OS=Dehalococcoides ethenogenes (strain 195) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 43/108 (39.81%), Postives = 60/108 (55.56%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            EV A  +    SA KVR  +D +RG+   E + +L  M       + K+I SAAAN  +N   N A L I++   +EA   KR RP+A+GRV  I + + HITVV+ D
Sbjct:    2 EVKAIVKDTGYSALKVRLCVDMVRGKKVSEAITMLRFMTSPTAKVVSKVIKSAAANAENNFQMNPADLKISQIYADEARMLKRMRPQARGRVSPILKRSSHITVVVAD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_BORPD (50S ribosomal protein L22 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplV PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            E +A  R +H+SA K R V D IRG+S  + L IL   P +A   + K + SA AN  HN G +   L I    V++A S KR   +A+GR + I++ TCHITV
Sbjct:    2 ETTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAGILKKAVESAIANAEHNDGADIDELKITTIFVDKAQSMKRFSARAKGRGNRIEKQTCHITV 105          
The following BLAST results are available for this feature:
BLAST of CF832669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_BORPE4.453e-1341.3550S ribosomal protein L22 OS=Bordetella pertussis ... [more]
RL22_BORPA4.453e-1341.3550S ribosomal protein L22 OS=Bordetella parapertus... [more]
RL22_BORBR4.453e-1341.3550S ribosomal protein L22 OS=Bordetella bronchisep... [more]
RL22_BORA14.453e-1341.3550S ribosomal protein L22 OS=Bordetella avium (str... [more]
RL22_BACST4.453e-1339.8150S ribosomal protein L22 OS=Bacillus stearothermo... [more]
RL22_BACHD4.453e-1338.8950S ribosomal protein L22 OS=Bacillus halodurans G... [more]
RL22_KLEP75.816e-1341.6750S ribosomal protein L22 OS=Klebsiella pneumoniae... [more]
RL22_KLEP35.816e-1341.6750S ribosomal protein L22 OS=Klebsiella pneumoniae... [more]
RL22_DEHE15.816e-1339.8150S ribosomal protein L22 OS=Dehalococcoides ethen... [more]
RL22_BORPD5.816e-1342.3150S ribosomal protein L22 OS=Bordetella petrii (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832669 ID=CF832669; Name=CF832669; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTTAAAAAAAACAAAGAACGGGACGTTACTCATTCGAA
AAACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAA
TTAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAG
TGATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTA
GGTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGAT
GACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCG
CAGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGC
TCCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAAT
TACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAG
ACACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATT
C
back to top