CF832669

Overview
NameCF832669
Unique NameCF832669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:266..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_SALG2 (50S ribosomal protein L22 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_SALEP (50S ribosomal protein L22 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_SALDC (50S ribosomal protein L22 OS=Salmonella dublin (strain CT_02021853) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_SALAR (50S ribosomal protein L22 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETLAQHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_SALA4 (50S ribosomal protein L22 OS=Salmonella agona (strain SL483) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_RUTMC (50S ribosomal protein L22 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 42/104 (40.38%), Postives = 61/104 (58.65%), Query Frame = -3
Query:  146 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITV 457
            EV A  +Y   SA KVR V +QIR +S +E L IL     +A   I K++ SA +N  HN G +   L +A   ++E ++ KR RP+A+G+ + I + T HITV
Sbjct:    3 EVKAIHKYAKTSAFKVRLVANQIRLKSVDEALNILSFSNKKAAVLIKKVLNSAISNAEHNDGLDIDELFVASICIDEGSTMKRIRPRAKGKANRILKRTSHITV 106          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_ROSS1 (50S ribosomal protein L22 OS=Roseiflexus sp. (strain RS-1) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            +  A  +Y+ +S  KVR V+D +RG+  +  L IL  +P++A   I + I SA AN  +N      +L++     +E  + KR  P+A+GR   I++ T HITV++ D
Sbjct:    2 QAKAVTKYVRISPTKVRPVMDLVRGKPVDRALAILRYLPHKAAREIARTIESARANATNNYDMAPDALIVKYIFADEGPAFKRIMPRARGRADRIRKRTTHITVIVDD 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_LARHH (50S ribosomal protein L22 OS=Laribacter hongkongensis (strain HLHK9) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  140 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 457
            +VSA  +   +SA K R V D IRG+S E+ L  L   P ++   + K++ SA AN  HN G +  +L +A   V++  S KR   +A+GR + I++ TCHIT+V+
Sbjct:    2 KVSAVLKNARVSAQKARLVADLIRGKSVEQALNTLTFTPKKSAVLMKKVLESAIANAEHNEGADIDTLKVATVYVDKGPSLKRFTARAKGRGNRIEKQTCHITLVV 107          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_EXIS2 (50S ribosomal protein L22 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = -3
Query:  134 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 448
            ASA  + ++  K R V+D IRG+   E L IL      A   + K++ SA AN  HN   N  +LV+ +A VNE  + KR RP+A GR   I + T H+ +V+ +
Sbjct:    5 ASANMVRIAPRKARLVVDLIRGKQIGEALSILAYTNKAATPIVEKVLKSAIANAEHNFDMNIENLVVTEAYVNEGPTLKRFRPRAMGRASRINKRTSHVHIVVSE 109          
BLAST of CF832669 vs. ExPASy Swiss-Prot
Match: RL22_ESCF3 (50S ribosomal protein L22 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplV PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  134 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 457
            E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct:    2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109          
The following BLAST results are available for this feature:
BLAST of CF832669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL22_SALG21.692e-1240.7450S ribosomal protein L22 OS=Salmonella gallinarum... [more]
RL22_SALEP1.692e-1240.7450S ribosomal protein L22 OS=Salmonella enteritidi... [more]
RL22_SALDC1.692e-1240.7450S ribosomal protein L22 OS=Salmonella dublin (st... [more]
RL22_SALAR1.692e-1240.7450S ribosomal protein L22 OS=Salmonella arizonae (... [more]
RL22_SALA41.692e-1240.7450S ribosomal protein L22 OS=Salmonella agona (str... [more]
RL22_RUTMC1.692e-1240.3850S ribosomal protein L22 OS=Ruthia magnifica subs... [more]
RL22_ROSS11.692e-1234.2650S ribosomal protein L22 OS=Roseiflexus sp. (stra... [more]
RL22_LARHH1.692e-1238.6850S ribosomal protein L22 OS=Laribacter hongkongen... [more]
RL22_EXIS21.692e-1238.1050S ribosomal protein L22 OS=Exiguobacterium sibir... [more]
RL22_ESCF31.692e-1240.7450S ribosomal protein L22 OS=Escherichia fergusoni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832669 ID=CF832669; Name=CF832669; organism=Citrus sinensis; type=EST; length=501bp
TTTTTTTTTTTTTTTAAAAAAAACAAAGAACGGGACGTTACTCATTCGAA
AAACATCAAAAGATAACTAAGCAAACTTGAAATACAAGTGAAATCTGTAA
TTAGGAAACCGCATATTCATCATCTAAAGACATGTCTCTTAACACAACAG
TGATATGACAAGTGGGTCTTTTGATCATATGAACCCTCCCTTGAGCTTTA
GGTCTCGGTCTTTTAGCAGAAGTAGCCTCGTTCACTTCCGCTTTGGCGAT
GACTAAACTGGCCTCGTTGAAGCCCATATTGTGAACACCATTTGCCGCCG
CAGAATAAATCAGTTTGAAAATGGGATAACAGGCCCGATAAGGCATGAGC
TCCAGTATCATAAGCGTCTCCTCGTAAGAACGTCCGCGAATCTGATCAAT
TACCCTTCGGACTTTGTGAGCAGACATGTGCAGATATCGAGCTGAAGCAG
ACACTTCTGCCTTCTTGTTGGTCTTGTTTCTGTTGTTCGGCGGCGATATT
C
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