CF832670

Overview
NameCF832670
Unique NameCF832670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1546 contig Csv1_Contig1546:265..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_LEMMI (50S ribosomal protein L22, chloroplastic OS=Lemna minor GN=rpl22 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.890e-35
Identity = 76/116 (65.52%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   28 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 375
            K + + EV A A+ +HMS  K RRVIDQIRGRSYEETLMILELMPYRA + I KL+YSAAAN  +N+G NEA   I+KAEVN  T  KR RP+A+GR + IKRPTCHIT+VL+D S
Sbjct:    4 KNSTRTEVKALAQNIHMSPFKARRVIDQIRGRSYEETLMILELMPYRAAFTILKLVYSAAAN-ANNLGLNEAESFISKAEVNGGTVLKRLRPRARGRSYRIKRPTCHITIVLKDKS 118          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_CUSRE (50S ribosomal protein L22, plastid OS=Cuscuta reflexa GN=rpl22 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.224e-35
Identity = 71/119 (59.66%), Postives = 93/119 (78.15%), Query Frame = 1
Query:   28 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDD 384
            +  K  E+ A  +++ MSA K RRVIDQIRGRSYEETLMILELMPYRA YPI KL+YSAA+N  + +  NEA+L I+KAEVN+  + K+ +P+A+GR + IKRPTCHIT++L+D+S  D
Sbjct:    2 RKTKAPEIYALGQHISMSADKARRVIDQIRGRSYEETLMILELMPYRAAYPILKLVYSAASNASYTLDSNEANLFISKAEVNQGPAIKKLKPRARGRSYPIKRPTCHITILLKDISFYD 120          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_CYCTA (50S ribosomal protein L22, chloroplastic OS=Cycas taitungensis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.225e-34
Identity = 67/116 (57.76%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   28 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 375
            K +   ++ A A+++ MS H+ RRVIDQ+R RSYE+ LMILELMPYRACYPI +LI SAAAN  HN+G N+A+L +++AEVNE    KR +P+AQGR + I++PTCHIT+VL + S
Sbjct:    3 KNSSSPKIRALAKHIRMSTHRARRVIDQVRNRSYEQALMILELMPYRACYPILQLISSAAANANHNIGLNKANLFVSRAEVNEGAILKRSQPRAQGRGYPIQKPTCHITIVLEERS 118          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PINKO (50S ribosomal protein L22, chloroplastic OS=Pinus koraiensis GN=rpl22 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.037e-33
Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS 399
            E+ A AR + MSAHK RRVI+QIRGRSY + LMILELMPY ACYPI +LI+SAAAN  HNMG N+A+L++ + EVNE    KR +P+AQGR + I++PTCHIT+V  ++S  ++  +S
Sbjct:   12 EIRALARNIRMSAHKARRVINQIRGRSYGQALMILELMPYGACYPISQLIHSAAANANHNMGLNKANLLVGRVEVNEGAVLKRIQPRAQGRGYPIQKPTCHITIVSEEISRSNDPIMS 129          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PINTH (50S ribosomal protein L22, chloroplastic OS=Pinus thunbergii GN=rpl22 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.354e-33
Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS 399
            E+ A AR + MSAHK RRVI+QIRGRSY + LMILELMPY ACYPI +LI+SAAAN  HNMG N+A+L++ + EVNE    KR +P+AQGR + I++PTCHIT+V  ++S  ++  +S
Sbjct:   12 EIRALARNIRMSAHKARRVINQIRGRSYGQALMILELMPYGACYPISQLIHSAAANANHNMGLNKANLLVGRVEVNEGAVFKRIQPRAQGRGYPIQKPTCHITIVSEEISRSNDPIMS 129          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PICAB (50S ribosomal protein L22, chloroplastic OS=Picea abies GN=rpl22 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.017e-33
Identity = 68/118 (57.63%), Postives = 92/118 (77.97%), Query Frame = 1
Query:   46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSLDDEYAVS 399
            E+ A AR + MSAHK R+VI+QIRG SY + LMILELMPY ACYPI +LI+SAAAN  HNMG N+A+L++++ EVNE    KR +P+AQGR + I++PTCHIT+VL ++S  ++  +S
Sbjct:   12 EIRALARNIRMSAHKARKVINQIRGCSYGQALMILELMPYGACYPISQLIHSAAANANHNMGLNKANLLVSRVEVNEGAVFKRVQPRAQGRGYPIQKPTCHITIVLEEISRSNDPIMS 129          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PHAAO (50S ribosomal protein L22, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl22 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 68/112 (60.71%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   34 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 369
            N+  E    A+ + MS  K RRVIDQIRGRSYEE LMILELMPYRA YPI KL+YSAAAN  HNMG NE  L I+KAEVN  T  K+ +P+A+GR ++IK+ TCHI + L++
Sbjct:    4 NENREAKVLAQNICMSVFKARRVIDQIRGRSYEEALMILELMPYRASYPILKLVYSAAANASHNMGLNEVDLFISKAEVNRGTIMKKLKPRARGRSYLIKKTTCHIKIFLKE 115          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PSINU (50S ribosomal protein L22, chloroplastic OS=Psilotum nudum GN=rpl22 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.554e-32
Identity = 65/113 (57.52%), Postives = 92/113 (81.42%), Query Frame = 1
Query:   37 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMS 375
            KK EV A A+Y+ MSAHKVRRVI+QIRGRSYEE L+ LE +PYRACYP+ +L+ SAAAN  +N+G  + +L+I++A+V+EA+ +KR +P+AQGR + I++ TCHIT+ +R+ S
Sbjct:    3 KKKEVRALAKYVKMSAHKVRRVINQIRGRSYEEALISLEFLPYRACYPLLQLVSSAAANANNNLGLKKDTLLISEAKVDEASVSKRFQPRAQGRAYSIQKDTCHITIKIRERS 115          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RK22_PHYPA (50S ribosomal protein L22, chloroplastic OS=Physcomitrella patens GN=rpl22 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.690e-32
Identity = 63/108 (58.33%), Postives = 86/108 (79.63%), Query Frame = 1
Query:   46 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 369
            EV A A+++ MSAHK RRV++QIRGRSYE+ LMILE MPYRACYPI +L+ SAAAN  HN+  N A+L+I++A+V+E    KR +P+AQGR + I +PTCHIT+ +++
Sbjct:    9 EVRALAKHIRMSAHKARRVVNQIRGRSYEQALMILEFMPYRACYPILQLVSSAAANANHNLNLNRANLIISEAKVDEGPVLKRFQPRAQGRGYPIHKPTCHITITVKN 116          
BLAST of CF832670 vs. ExPASy Swiss-Prot
Match: RL22_CYAP8 (50S ribosomal protein L22 OS=Cyanothece sp. (strain PCC 8801) GN=rplV PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:   43 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 363
            AEV A ARY+ MS HKVRRV+DQIRGRSY E L+ILE MPYRAC PI K++ SAAAN  HN G + A+LV+++A  +   S +R RP+AQGR + I++PTCHITV +
Sbjct:    7 AEVKAIARYIRMSPHKVRRVLDQIRGRSYREALIILEFMPYRACDPILKVLRSAAANAEHNEGLDRATLVVSQAYADGGPSLRRYRPRAQGRAYQIRKPTCHITVAV 113          
The following BLAST results are available for this feature:
BLAST of CF832670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK22_LEMMI1.890e-3565.5250S ribosomal protein L22, chloroplastic OS=Lemna ... [more]
RK22_CUSRE3.224e-3559.6650S ribosomal protein L22, plastid OS=Cuscuta refl... [more]
RK22_CYCTA1.225e-3457.7650S ribosomal protein L22, chloroplastic OS=Cycas ... [more]
RK22_PINKO1.037e-3358.4750S ribosomal protein L22, chloroplastic OS=Pinus ... [more]
RK22_PINTH1.354e-3358.4750S ribosomal protein L22, chloroplastic OS=Pinus ... [more]
RK22_PICAB3.017e-3357.6350S ribosomal protein L22, chloroplastic OS=Picea ... [more]
RK22_PHAAO5.147e-3360.7150S ribosomal protein L22, chloroplastic OS=Phalae... [more]
RK22_PSINU2.554e-3257.5250S ribosomal protein L22, chloroplastic OS=Psilot... [more]
RK22_PHYPA5.690e-3258.3350S ribosomal protein L22, chloroplastic OS=Physco... [more]
RL22_CYAP89.706e-3260.7550S ribosomal protein L22 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832670 ID=CF832670; Name=CF832670; organism=Citrus sinensis; type=EST; length=503bp
GGAATATCGCCGCCTAACAACAGAAACAAGACCAACAAGAAGGCAGAAGT
GTCTGCTTCAGCTCGATATCTGCACATGTCTGCTCACAAAGTCCGAAGGG
TAATTGATCAGATTCGCGGACGTTCTTACGAGGAGACGCTTATGATACTG
GAGCTCATGCCTTATCGGGCCTGTTATCCCATTTTCAAACTGATTTATTC
TGCGGCGGCAAATGGTGTTCACAATATGGGCTTCAACGAGGCCAGTTTAG
TCATCGCCAAAGCGGAAGTGAACGAGGCTACTTCTGCTAAAAGACCGAGA
CCTAAAGCTCAAGGGAGGGTTCATATGATCAAAAGACCCACTTGTCATAT
CACTGTTGTGTTAAGAGACATGTCTTTAGATGATGAATATGCGGTTTCCT
AATTACAGATTTCACTTGTATTTCAAGTTTGCTTAGTTATCTTTTGATGT
TTTTCTAATGAGTAACGTCCCGTTCTTTGTTTTTTTTAAAAAAAAAAAAA
AAA
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