CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:21..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_GEOSL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter sulfurreducens GN=fabZ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            TV DIN+I  ILPHR+PFLLVDR++EY  G   V IKNV+IN+ FF GHFP  P+MPGVL+VE
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEYVAGERIVGIKNVSINEPFFQGHFPGHPVMPGVLIVE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_DESDG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfovibrio desulfuricans (strain G20) GN=fabZ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +++DI QI  +LPHR+PFLLVDRV++Y PG    A+KNVT+N+ FF GHFPD P+MPGVL++E
Sbjct:    7 SILDIRQILGLLPHRYPFLLVDRVLDYTPGECITAVKNVTMNEPFFQGHFPDVPVMPGVLIME 69          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.087e-18
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            TV+ + +++ +LPHR+PFLLVDR+I+Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VE
Sbjct:   11 TVLTVTELQQLLPHRYPFLLVDRIIDYVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVE 73          

HSP 2 Score: 20.4014 bits (41), Expect = 2.087e-18
Identity = 7/13 (53.85%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  627 LRAMAQVGGLVML 665
            + A+AQVGG+V++
Sbjct:   72 VEALAQVGGVVLM 84          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH7803) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.092e-18
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVAIKNVT+N+  F GHFPDRP+MPGVL+VE
Sbjct:    6 VLNAEQIMGLLPHRYPFALVDRVLEHVPGEKAVAIKNVTLNEPQFQGHFPDRPLMPGVLIVE 67          

HSP 2 Score: 21.557 bits (44), Expect = 2.092e-18
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGGL++
Sbjct:   59 LMPGVLIVEAMAQVGGLIV 77          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_CARHZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fabZ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            + DI +I +ILPHR+PFLLVD+++E  PG  AV IKNVTIN+ FF GHFP RPIMPGVL++E
Sbjct:    5 IKDITEIMNILPHRYPFLLVDKILEVVPGEKAVGIKNVTINEPFFQGHFPGRPIMPGVLLLE 66          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNSC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9605) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.534e-18
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+   QI  +LPHR+PF LVDRVI ++PGVSA AIKNVT+N+  F GHFP+RP+MPGVL+VE
Sbjct:   10 VLTSEQIAGLLPHRYPFALVDRVIAHDPGVSATAIKNVTMNEPQFQGHFPERPLMPGVLIVE 71          

HSP 2 Score: 21.557 bits (44), Expect = 3.534e-18
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGGL++
Sbjct:   63 LMPGVLIVEAMAQVGGLIV 81          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_MARMS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Marinomonas sp. (strain MWYL1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MD+N+IR  LPHR+PFLLVDR++E N   S +A KNVTIN+ FF GHFP+ P+MPGVL++E
Sbjct:    1 MMDVNEIRQYLPHRYPFLLVDRIVEINLNDSIIAYKNVTINEPFFNGHFPNHPVMPGVLIIE 62          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Lens) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+E
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+E
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Corby) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+E
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLE 65          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_GEOSL1.690e-1866.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DESDG1.690e-1861.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB2.087e-1863.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPW2.092e-1866.13(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CARHZ2.207e-1866.13(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNSC3.534e-1866.13(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MARMS3.764e-1862.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPL3.764e-1868.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPH3.764e-1868.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_LEGPC3.764e-1868.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
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