CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ACIBL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acidobacteria bacterium (strain Ellin345) GN=fabZ PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+D+  I+ ILPHR+P LL+DR+IE+      VAIKNVTIN+ FF GHFP  PIMPGVL+VE
Sbjct:    7 VLDVTDIQKILPHRYPLLLLDRIIEFKRKERIVAIKNVTINEQFFQGHFPGYPIMPGVLIVE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_THERP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 2
Query:  461 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            QI++I+PHR+PFLLVDR+IE   G  AV IKNVT+N+ FF GHFP  P+MPGVL++E
Sbjct:    6 QIQEIIPHRYPFLLVDRIIEIEWGQRAVGIKNVTVNEPFFVGHFPGNPVMPGVLIIE 62          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHEDO ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I   LPHR+PFLL+DRV+++  G S  AIKNVTIN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDFTRGESLHAIKNVTINEPFFQGHFPVQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_RUBXD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  461 QIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +IR +LPHR+PFLLVDR+ E  PGV AV +KNVT N+ FF GHFP  P+MPGVL+VE
Sbjct:    9 EIRRLLPHRYPFLLVDRIEELEPGVRAVGVKNVTQNEPFFQGHFPGYPVMPGVLIVE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_RICCK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Rickettsia canadensis (strain McKiel) GN=fabZ PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I +++PHR+PFLLVDRV+E +   S + IKNVT+N+  F GHFP RP+MPGVLMVE
Sbjct:    1 MDITEIMNLIPHRYPFLLVDRVLEIDLNKSILGIKNVTVNEPQFTGHFPARPVMPGVLMVE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PSEAE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa GN=fabZ PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MDIN+IR+ LPHR+PFLLVDRV+E +  G    A KNV+IN+ FF GHFP+ PIMPGVL++E
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PSEAB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MDIN+IR+ LPHR+PFLLVDRV+E +  G    A KNV+IN+ FF GHFP+ PIMPGVL++E
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PSEA8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain LESB58) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MDIN+IR+ LPHR+PFLLVDRV+E +  G    A KNV+IN+ FF GHFP+ PIMPGVL++E
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PSEA7 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain PA7) GN=fabZ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MDIN+IR+ LPHR+PFLLVDRV+E +  G    A KNV+IN+ FF GHFP+ PIMPGVL++E
Sbjct:    1 MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_METFK ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=fabZ PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI++I + LPHR+PF+LVDRV+        VA+KNVTIN+ FFPGHFP  P+MPGVL+VE
Sbjct:    1 MDIHEILNYLPHRYPFVLVDRVLSLELNKEIVAVKNVTINEPFFPGHFPYHPVMPGVLIVE 61          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_ACIBL2.697e-1662.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THERP3.523e-1664.91(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEDO3.523e-1662.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RUBXD3.523e-1666.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_RICCK3.523e-1662.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEAE3.523e-1663.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEAB3.523e-1663.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEA83.523e-1663.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEA73.523e-1663.49(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_METFK3.523e-1662.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
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