CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:21..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_LEGPA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Legionella pneumophila (strain Paris) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI  +LPHR+PF+LVDRVI+Y      +AIKNVTIN+NFF GHFP  PIMPGVLM+E
Sbjct:    5 IDINQIFTLLPHRYPFILVDRVIDYKVMEYLIAIKNVTINENFFTGHFPGNPIMPGVLMLE 65          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ACIAC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +MDI+QI  +LPHR+PFLLVDRV+E   G    AIKNVTIN+ FF GHFP+RP+MPGVLM+E
Sbjct:    1 MMDIHQILKLLPHRYPFLLVDRVVELERGERIQAIKNVTINEPFFTGHFPNRPVMPGVLMLE 62          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ACAM1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acaryochloris marina (strain MBIC 11017) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.586e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  443 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            T   I +I+++LPHR+PFLLVDR+I+Y     AV IKNVT+N+ FF GHFP RP+MPGVL+VE
Sbjct:   13 TTFMIEEIQELLPHRYPFLLVDRIIDYKESERAVGIKNVTMNEEFFQGHFPGRPLMPGVLIVE 75          

HSP 2 Score: 21.557 bits (44), Expect = 4.586e-18
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGG+V+
Sbjct:   67 LMPGVLIVEAMAQVGGIVL 85          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS195) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS185) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB5 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS223) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_JANMA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Janthinobacterium sp. (strain Marseille) GN=fabZ PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI+  LPHR+P LLVDRV+ +  G S  AIKNVT+N+ FF GHFP +P+MPGVLM+E
Sbjct:    4 LDINQIKQYLPHRYPLLLVDRVLNWESGKSITAIKNVTVNEEFFNGHFPHKPVMPGVLMIE 64          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_CAMHC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEG 634
            ++DIN+I +ILPHRFPFLL+DRVI+  PG+S  A KNVT N+  F GHFP  PI PGV+++EG
Sbjct:    1 MIDINEILEILPHRFPFLLIDRVIDLQPGISIKAYKNVTFNEQIFQGHFPGHPIYPGVMIIEG 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_BACCZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain ZK / E33L) GN=fabZ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFPD P+MPGVL+VE
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVE 62          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_LEGPA3.764e-1868.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACIAC3.764e-1867.74(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACAM14.586e-1861.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB94.916e-1865.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB84.916e-1865.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB54.916e-1865.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB24.916e-1865.57(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_JANMA4.916e-1863.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CAMHC4.916e-1861.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACCZ4.916e-1862.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
back to top