CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1779 contig Csv1_Contig1779:21..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_DESRM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Desulfotomaculum reducens (strain MI-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++DIN I+ ILPHR+PFLLVDR++E   G   V IKNVT N+ FFPGHFP  P+MPGVL++E
Sbjct:    1 MLDINAIQQILPHRYPFLLVDRILEMEEGKRVVGIKNVTANEPFFPGHFPGYPVMPGVLVIE 62          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_THEP3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            M+   IR ILPHR+PFLLVDR+IE   G  AV IKNVT N+ FF GHFPD PIMPGVL+VE
Sbjct:    1 MENKDIRKILPHRYPFLLVDRIIEIEEGKKAVGIKNVTANEPFFQGHFPDNPIMPGVLIVE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SHESH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella sediminis (strain HAW-EB3) GN=fabZ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI +I + LPHR+PFLL+DRV++Y PG +  AIKNVTIN+ FF GHFP +P+MPGVL++E
Sbjct:    8 MDIKEIMNSLPHRYPFLLIDRVLDYTPGETLHAIKNVTINEPFFQGHFPIQPVMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_ALCBS ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fabZ PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.430e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            MDI ++R+ LPHR+PFLL+DRV+   PG    A+KNVTIN+ FF GHFP+ PIMPGVL++E
Sbjct:    1 MDIKEVREYLPHRYPFLLIDRVLNIEPGKRIEALKNVTINEPFFNGHFPEEPIMPGVLIIE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH8102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.705e-17
Identity = 40/62 (64.52%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+   QI  +LPHR+PF LVDRVI + PGVSA  IKNVT+N+  F GHFP RP+MPGVL+VE
Sbjct:   15 VLTSEQIAGLLPHRYPFALVDRVIAHEPGVSATGIKNVTVNEPQFQGHFPGRPLMPGVLIVE 76          

HSP 2 Score: 21.557 bits (44), Expect = 1.705e-17
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLVM 662
            L P    + AMAQVGGL++
Sbjct:   68 LMPGVLIVEAMAQVGGLIV 86          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_HERAR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Herminiimonas arsenicoxydans GN=fabZ PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.868e-17
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +DINQI+  LPHR+P LLVDRV+ +  G S  AIKNVT N+ FF GHFP +P+MPGVLM+E
Sbjct:    4 LDINQIKQYLPHRYPMLLVDRVLTWESGKSITAIKNVTANEEFFNGHFPHKPVMPGVLMIE 64          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_GLOVI ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Gloeobacter violaceus GN=fabZ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.231e-17
Identity = 39/62 (62.90%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++D  +I+ IL HR+PFLLVDRV+ + PGV AV IKNVTIN+ FF GHFP RP+MPG L++E
Sbjct:    1 MIDNIEIQKILAHRYPFLLVDRVLVFEPGVRAVGIKNVTINEPFFQGHFPGRPLMPGALLIE 62          

HSP 2 Score: 21.1718 bits (43), Expect = 2.231e-17
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  606 LCPVFSWLRAMAQVGGLV 659
            L P    + AMAQVGG+V
Sbjct:   54 LMPGALLIEAMAQVGGIV 71          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_THETN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermoanaerobacter tengcongensis GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            M+   IR ILPHR+PFLLVDR+IE   G  AV IKNVT N+ FF GHFPD PIMPGVL+VE
Sbjct:    1 MENKDIRKILPHRYPFLLVDRIIELEEGKRAVGIKNVTSNEPFFQGHFPDNPIMPGVLIVE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_THEPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermoanaerobacter sp. (strain X514) GN=fabZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            M+   IR ILPHR+PFLLVDR+IE   G  AV IKNVT N+ FF GHFPD PIMPGVL+VE
Sbjct:    1 MENKGIRKILPHRYPFLLVDRIIEIEEGKKAVGIKNVTANEPFFQGHFPDNPIMPGVLIVE 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_SYNWW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=fabZ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++  +I  ILPHR+PFLLVDR+IE  PG  AV IKN+++N+ FFPGHFP  P+MPGVLM+E
Sbjct:    6 LNTEEIMKILPHRYPFLLVDRIIELLPGERAVGIKNLSVNEPFFPGHFPGHPVMPGVLMIE 66          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_DESRM1.095e-1762.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEP31.430e-1768.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHESH1.430e-1763.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ALCBS1.430e-1762.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPX1.705e-1764.52(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_HERAR1.868e-1763.93(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GLOVI2.231e-1762.90(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THETN2.440e-1768.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEPX2.440e-1768.85(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNWW2.440e-1762.30(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
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