CF832674

Overview
NameCF832674
Unique NameCF832674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_FRAT1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=fabZ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 35/62 (56.45%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +D+  IR ILPHR+PF L+D++++++    + VA KNVTIN++FF GHFPD P+MPGVL+VE
Sbjct:   11 IDVMGIRKILPHRYPFALLDKIVDWSVEDRTIVAQKNVTINEDFFNGHFPDFPVMPGVLIVE 72          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_CLOTE ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium tetani GN=fabZ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  455 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            I  I  ILPHR+P LL+D+V    PG   VA KNVT N+ FF GHFP  P+MPGVL++E
Sbjct:    6 IKDILQILPHRYPMLLIDKVETVEPGKKIVAYKNVTFNEGFFRGHFPHEPVMPGVLIIE 64          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_BAUCH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=fabZ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            + + +I ++LPHRFPFLLVDRVI++       AIKNV+ N+ FF GHFP +PI PGVL++E
Sbjct:    8 LHLEEILELLPHRFPFLLVDRVIDFKKWQFLYAIKNVSYNEPFFQGHFPGKPIFPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_STRU0 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++DI  I++ LPHR+P LLVDRV+E +     VA+KNVTIN+ FF GHFP  P+MPGVL++E
Sbjct:    1 MIDIKDIQEALPHRYPMLLVDRVLEVSDD-HIVALKNVTINEPFFNGHFPHYPVMPGVLIME 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_STRS2 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Streptococcus suis (strain 98HAH33) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            ++DI +I++ LPH +P LLVDRV+E +     VA+KNVTIN+ FF GHFPD P+MPGVL++E
Sbjct:    1 MIDILKIKEALPHLYPMLLVDRVLEVSED-EIVALKNVTINEPFFNGHFPDYPVMPGVLIME 61          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_PSEA6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  449 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            + I +I ++LPHR+PFLL+DRV +Y  G S  A KN+T N+  F GHFP +PI PGVL++E
Sbjct:    8 LGIEEILELLPHRYPFLLLDRVTDYTLGESITAYKNITFNEPCFTGHFPGKPIFPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_EHRCR ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Ehrlichia chaffeensis (strain Arkansas) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  452 DINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            +I +I  ++PH +PFLL+DRV    P  S  AIKNVT N+ FF GHFP  PIMPGVL+VE
Sbjct:    4 NIQEIIKMIPHSYPFLLIDRVTACTPNESVTAIKNVTFNEPFFIGHFPGNPIMPGVLIVE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_DEIGD ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Deinococcus geothermalis (strain DSM 11300) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  455 INQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            I  +   LPHRFPF+LVDRV+    G    A+KNVT+N+ FFPGHFP  P+MPGVL+VE
Sbjct:    6 IQDVLKTLPHRFPFVLVDRVLSAQDG-EVHALKNVTVNEPFFPGHFPQEPVMPGVLIVE 63          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_CHLFF ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chlamydophila felis (strain Fe/C-56) GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+ + ++ ++LPHR+PFLLVD+V+ Y+    S VA KNVTIN+ FF GHFP+ PIMPGVL++E
Sbjct:    6 VIKLRELLNLLPHRYPFLLVDKVLSYDLEKRSIVAQKNVTINEPFFVGHFPEAPIMPGVLILE 68          
BLAST of CF832674 vs. ExPASy Swiss-Prot
Match: FABZ_CHLAB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Chlamydophila abortus GN=fabZ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  446 VMDINQIRDILPHRFPFLLVDRVIEYN-PGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVE 631
            V+ + ++ ++LPHR+PFLLVD+V+ Y+    S VA KNVTIN+ FF GHFP+ PIMPGVL++E
Sbjct:    6 VIKLRELLNLLPHRYPFLLVDKVLSYDLERRSIVAQKNVTINEPFFVGHFPEAPIMPGVLILE 68          
The following BLAST results are available for this feature:
BLAST of CF832674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_FRAT19.594e-1456.45(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOTE9.594e-1457.63(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BAUCH9.594e-1455.74(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRU01.253e-1358.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_STRS21.253e-1358.06(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PSEA61.253e-1354.10(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_EHRCR1.253e-1358.33(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_DEIGD1.253e-1359.32(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLFF1.253e-1357.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CHLAB1.253e-1357.14(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02D24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832674 ID=CF832674; Name=CF832674; organism=Citrus sinensis; type=EST; length=665bp
CTTTTGCCAACTCCTAATCCCATCATTGGTCTCTCCTACTAGTACCCCTA
GACTATCTCGTTAATGTCGCCGCCGACCAACTGCCATGGGTTTGATTTAA
ATGTCTATTCTTACATCTCTGCCTCATTTTATTAGCTAACATATTAATCC
TCAATTGAATCAATAGAATCCAATCTCTCAGTTCTTCTCTCTTACAATGG
CCACTACCCCTGCTGCTTCTTTTGCCAATTCACTTTTATCTCTCAATTCT
CATCGACCAAACCCAAATGCCTCCTCTATTCCAAAACCCAACACTCTCTC
CATCCAATTTGACAAGAAGAAGAATCAACAACAACAGCAGCACCAACGAC
ATGCTCGTTTCACCACATTTTGTTCTTTGGACGCTGAACCCAAAGATCCC
ATCGAAGATAAACCCATCGAACTTCGGTACCAGGCATTTCCTACAGTGAT
GGACATTAACCAGATTCGTGACATTTTGCCACACAGGTTCCCATTTCTTT
TGGTGGATAGAGTTATTGAATACAATCCAGGAGTTTCAGCTGTTGCTATT
AAGAATGTTACTATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAG
GCCAATTATGCCCGGTGTTCTCATGGTTGAGGGCAATGGCACAGGTTGGT
GGCTTGGTTATGCTG
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