CF832680

Overview
NameCF832680
Unique NameCF832680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:176..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 38/101 (37.62%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + +  +  S  +VV+F+ + C  C +V  LF  LGV     ELD++  G +++ AL +  G+   VP VFIGGK +GG +   +LH  G+L+P+L  AGA+
Sbjct:    1 MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGAL 101          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX_PSEAE (Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  103 VVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLT 351
            VV+++   CP+C+  K+L Q+ GV F+ I  D + +   +++ LA   G  TVP ++IG  H+GGCD   AL R GKL  LL+
Sbjct:    4 VVIYTTAWCPYCIRAKQLLQRKGVDFQEIACDGKPE---LRAELARKAGSTTVPQIWIGETHVGGCDDLHALERAGKLDALLS 83          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   91 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKES-DGSDIQSALAEWTGQKT-VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            +  +VV+F+ + CP C +V  LF  LGV     ELD++   G D++  LA   G+   VP VFI GK +G  D   +LH  GKLVP+L  AGA+
Sbjct:    9 TEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDRDPLHGRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAI 102          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX1_RABIT (Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.272e-12
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   76 AQETVSSN----SVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            AQE V+S      VVVF K  CP+C   +E+  QL       + +++   SD S+IQ  L + TG +TVP VF+G   IGGC    A+  +G+L+  L E GA+
Sbjct:    1 AQEFVNSKIQPGKVVVFIKPTCPYCRKTQEILSQLPFKQGLLEFVDITATSDMSEIQDYLQQLTGARTVPRVFLGKDCIGGCSDLIAMQEKGELLARLKEMGAL 104          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC8_ARATH (Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 41/108 (37.96%), Postives = 58/108 (53.70%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKT--------VPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            L K +   + N+VV+FS + C  C ++K LF+ +GV+    ELD    G +I  AL    G  +        +P VFIGGK +G  +   A H  G LVPLL +AGA+
Sbjct:   31 LAKIESMAAENAVVIFSVSTCCMCHAIKRLFRGMGVSPAVHELDLLPYGVEIHRALLRLLGCSSGGATSPGALPVVFIGGKMVGAMERVMASHINGSLVPLLKDAGAL 138          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 39/98 (39.80%), Postives = 55/98 (56.12%), Query Frame = 1
Query:   91 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            S  +VVVF+K+ C  C +V  L  +L V+    ELD++  G +++  LA         G   VP VFIGG  +GG     A+H +G+LVPLL  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDRDPLGKEMEKELARRLYGSSGRGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGAL 107          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.120e-11
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            + K     S   VV+F+K+ C    +V+ LFQ LGV  K  E+DK+ +  +I+ AL      K VP VFIGGK +G  +   ++H    LVPL+
Sbjct:    1 MDKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + + ++  S  + V+F+K+ C  C S+K LF +LG +    ELDK+  G D++ AL    G    VP VF+GG+++G      + H +G L  +L  + A+
Sbjct:    1 MERVRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVFGSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAI 101          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: TRXR1_HUMAN (Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 360
            Q  +  +SVV+FS++ C  C  VK+LF+ L V +  +ELD+  DG  ++  L+E   +  +P VF+  + IGG   T   ++EG+L  LL   G
Sbjct:   60 QAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRALEGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLLKMNG 153          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSAL-AEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + + ++  S  + V+F+K+ C  C S+K LF +LG +    ELDK+ +G +++ AL A  +    VP VF+GG++IG      + H +G L  +L +A A+
Sbjct:    1 MERIRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALGSSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAI 101          
The following BLAST results are available for this feature:
BLAST of CF832680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GRC14_ORYSJ1.918e-1237.62Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GLRX_PSEAE3.271e-1240.96Glutaredoxin OS=Pseudomonas aeruginosa GN=grx PE=3... [more]
GRC15_ORYSJ4.272e-1242.55Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]
GLRX1_RABIT4.272e-1239.42Glutaredoxin-1 OS=Oryctolagus cuniculus GN=GLRX PE... [more]
GRXC8_ARATH1.243e-1137.96Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 P... [more]
GRC11_ORYSJ1.243e-1139.80Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRS11_ARATH2.120e-1138.30Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC12_ARATH2.769e-1132.67Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
TRXR1_HUMAN3.616e-1136.17Thioredoxin reductase 1, cytoplasmic OS=Homo sapie... [more]
GRC11_ARATH3.616e-1133.66Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832680 ID=CF832680; Name=CF832680; organism=Citrus sinensis; type=EST; length=525bp
GGATTTGAAGCTCATTTAGGGTTTGTGAGATTTCGAATCAAAGACAAAGA
AGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTCCTCCAATT
CCGTCGTCGTTTTCAGCAAAACGCTTTGTCCGTTCTGCGTGAGTGTCAAA
GAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAACTGGACAA
AGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGAC
AGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGC
GATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCAC
TGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCT
GCCTGTTTATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCT
GTCTGAATTAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACT
TTTTTGTTCAAAAAAAAAAAAAAAA
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