CF832684

Overview
NameCF832684
Unique NameCF832684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:977..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 3
Query:   15 LKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            LKL + +++CMLVT P++++A I+CG V+GSL  C  +L  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AAR++ S LN   AA LPGAC V I Y IS  T+C+ VR
Sbjct:    5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 3
Query:   78 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            +TCGQV G+LA CIGFL+ GG +P  CC GV+++  ++RTT DR+  C+CLK AA ++  +N NNA  LPG CGV+IPYKISTST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.875e-26
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 3
Query:   12 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            +LKL   +VLC+LV  PL+  AI+  QV  SL PC+G++R     P P   C G+RSL +AAR   DRQ AC C+K  A  I  +N   AAGLPG C V IPYKIS S DC +V+
Sbjct:    6 SLKLACVVVLCLLVDAPLAQGAISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.977e-25
Identity = 55/114 (48.25%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    9 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            A + L++A ++ ML   P +A A+ CGQV   + PC+ +++ GGP P   CCNGVR L+  A+++ DRQT CNCLK  AR I +LNLNNAA +P  C V++PY IS   DCS++
Sbjct:    4 AQVLLMAAALVLMLTAAPRAAVALNCGQVDSKMKPCLTYVQ-GGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 3
Query:   78 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            ++CG V+  +A CI +LR  GP+P  CCNGV++L  +A TT DR+TAC CL  A+++I  +N   AAGLP  CGVSIPYKIS ST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAACCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.186e-24
Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 3
Query:    9 AALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC CLK  A SI  +N+   +G+PG CGVS+P+ IS STDC+KV
Sbjct:    5 AATQLVLVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.417e-23
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 3
Query:   18 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP---CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            K V+A+++  L+    +A A+TCGQV   LAPCI +  + G +  P   CC+GVR+LN+AA TT DRQT C CLKQ   ++  L  +  AG+P  CGV+IPY IS STDCS+V
Sbjct:    8 KYVAAVMVVALLLAAPAASAVTCGQVVSMLAPCIMY--ATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.417e-23
Identity = 58/116 (50.00%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    9 AALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:    5 AATQLVLVAMVAAMLIVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   75 AITCGQVSGSLAPCIGFLRSGGPIPMPCC-NGVRSLNAAARTTPDRQTACNC-LKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 347
            AI+CGQVS ++ PC+ + R  G  P   C +GVRSLNAAARTT DR+ ACNC LK AA  +  LN   A+ +PG CGV +PY IS S DCS+V
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CF832684 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 58/116 (50.00%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    9 AALKLVS-ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 350
            AA +LV  A+V  ML+    +  AI+CGQVS +L+PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:    5 AATQLVLVAMVAAMLLVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
The following BLAST results are available for this feature:
BLAST of CF832684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP5_ARATH8.027e-2753.51Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP1_PHAAU1.788e-2656.67Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP6_GOSHI8.875e-2650.43Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_HORVU1.977e-2548.25Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]
NLTP3_VITSX2.186e-2454.44Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP3_HORVU2.186e-2449.57Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP4_ORYSJ2.417e-2349.56Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLT42_HORVU2.417e-2350.00Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP_ELECO4.123e-2355.91Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLT43_HORVU4.123e-2350.00Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832684 ID=CF832684; Name=CF832684; organism=Citrus sinensis; type=EST; length=597bp
CTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTTTGGTTCTGTGCATGTTG
GTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAGGTGAGTGG
CTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCCTATACCTA
TGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCAGAACCACA
CCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCAGATCAAT
CCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAGGAGCTTGTGGAG
TCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGCTCTAAGGTCAGG
TGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGTTGACGGAGTAGA
ATAAATGTATAATAATAAGGACATTTTTGTGTCCGATTTATGAGTCTCTC
TCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGTTTCATGTTATGT
TTTATTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTT
ATTAAATGAAATCTTGCCTTGTGTTCAGTTTAAAAAAAAAAAAAAAA
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