CF832710

Overview
NameCF832710
Unique NameCF832710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:102..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHVP 351
            FK +   EKR+  + RI EKYPDRIPVI EK  +SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIF+D +LPPT A+MS IYE+ K EDGFLY+TY GENTFG+  P
Sbjct:    5 FKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVFP 120          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 83/112 (74.11%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK    LE R A + RI  KYP+R+PVIVEKA +SD+P+IDKKKYLVPADLT+GQFVYV+RKRIKL AEKAIF+FV N LPPT A+MSAIYE+ KDEDGFLY+TY GENTFG
Sbjct:    6 FKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.021e-42
Identity = 85/112 (75.89%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   EKR+A A RI +KY DRIPVI EK  +SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYE+ KDEDGFLY++Y GENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   +KR+A A RI +KY DRIPVI EKA +SDIP IDKKKYLVPADLTVGQFVYVIRKRIKL+ EKAIFIFVD++LPPT A+MS+IY++ KDEDGFLYV Y  ENTFG
Sbjct:    6 FKDEHPFDKRKAEAERIRQKYQDRIPVICEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_BOTFB (Autophagy-related protein 8 OS=Botryotinia fuckeliana (strain B05.10) GN=atg8 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-42
Identity = 85/112 (75.89%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   EKR+A A RI +KY DRIPVI EK  +SDI  IDKKKYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFVD VLPPT A+MS+IYE+ KDEDGFLY++Y GENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYNDRIPVICEKVEKSDIATIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_MAGGR (Autophagy-related protein 8 OS=Magnaporthe grisea GN=ATG8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.499e-41
Identity = 85/112 (75.89%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   EKR+A A RI +KY DRIPVI EK  +SDI  IDKKKYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV + LPPT A+MS+IYE  KDEDGFLY+TY GENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQDTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.269e-40
Identity = 80/117 (68.38%), Postives = 95/117 (81.20%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHVPV 354
            FK E   EKR+A AARI +++ DR+PVI EK   SDIP IDK+KYLVP DLTVGQFVYVIRKRIKL +EKAIFIFV+++LPPT A++S IYE+ KDEDGFLYV Y GENTFG  + +
Sbjct:    5 FKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFGEKLAI 121          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.658e-40
Identity = 79/112 (70.54%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   EKR+A A RI  K+ DRIPVI EK  +SDIP +DK+KYLVP DLTVGQFVYVIRKRIK+ +EKAIFIF+D++LPPT A+MS +YE+ KDEDGFLYV Y GENTFG
Sbjct:    5 FKDEHPFEKRKAEAMRIRYKFADRIPVICEKVEKSDIPEVDKRKYLVPCDLTVGQFVYVIRKRIKIPSEKAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_VANPO (Autophagy-related protein 8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.828e-40
Identity = 80/113 (70.80%), Postives = 94/113 (83.19%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGS 342
            FK E   EKR+  + RI EK+ +RIPVI EKA +SDIP IDK+KYLVP+DLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+MSA+Y++ KD+DGFLYVTY GENTFGS
Sbjct:    5 FKSEYPFEKRKTESERITEKFQNRIPVICEKAEKSDIPEIDKRKYLVPSDLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAVYQEHKDKDGFLYVTYSGENTFGS 117          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.823e-40
Identity = 80/112 (71.43%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK E   EKR+A + RI +++ +RIPVI EKA +SDIP IDK+KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV++ LPPT A+MSAIY++ KD+DGFLYVTY GENTFG
Sbjct:    5 FKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CF832710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_SCHPO2.313e-4271.55Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8B_ARATH2.313e-4274.11Autophagy-related protein 8b OS=Arabidopsis thalia... [more]
ATG8_SCLS13.021e-4275.89Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]
ATG8_CRYNE3.946e-4275.00Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8_BOTFB3.946e-4275.89Autophagy-related protein 8 OS=Botryotinia fuckeli... [more]
ATG8_MAGGR1.499e-4175.89Autophagy-related protein 8 OS=Magnaporthe grisea ... [more]
ATG8_CANAL1.269e-4068.38Autophagy-related protein 8 OS=Candida albicans GN... [more]
ATG8_PICPA1.658e-4070.54Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]
ATG8_VANPO2.828e-4070.80Autophagy-related protein 8 OS=Vanderwaltozyma pol... [more]
ATG8_YEAST4.823e-4071.43Autophagy-related protein 8 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832710 ID=CF832710; Name=CF832710; organism=Citrus sinensis; type=EST; length=683bp
TACTTCAAGCAAGAGCTTGATCTTGAGAAGAGACGCGCATAGGCTGCAAG
GATTATGGAGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGAAGGCAC
ATAGAAGTGACATACCAAATATAGATAAGAAGAAGTATCTTGTTCCAGCT
GACCTGACTGTAGGACAATTTGTCTATGTCATCCGTAAAAGGATCAAACT
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCTATTATGTCTGCCATATACGAACAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGGGGGGAGAACACATTTGGAAGCCACGTCCC
AGTTTACCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCGCATTTTTATCTCAATTGTCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAATTCTTACAGGCATAATATGTCAAGTTTCTTT
CTTGCCTTTCTATTTTGATGATTTTTTTTCGGTTAGGGTATTTGCTGCTG
GTTTCGATCTGTAATCTTTATCACGAAATACTTGACTTGGAACCCGGATT
CTGCGTGTTTGTGAGCCATTGCTATTTTTAAGA
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