CF832710

Overview
NameCF832710
Unique NameCF832710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2005 contig Csv1_Contig2005:102..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 58/112 (51.79%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            FK++  L++R A +  I+ KYP RIPVI EK  ++D+P I+KKK+LVP D++VGQF+Y++  R+ LS  KA+F+FV+N LP T A+M ++YE  KD+DGF+Y+ Y  E TFG
Sbjct:    4 FKEQYTLDERLAESREIIAKYPTRIPVIAEKYCKTDLPAIEKKKFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFG 339
            +K++   E R+    +I +KYPDR+PVIVEKA ++ +P++DK+KYLVP+DLTVGQF ++IRKRI L  E A+F FV+N +PPT A M  +YE   +ED FLYV Y  E+ +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 59/113 (52.21%), Postives = 83/113 (73.45%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEQKKDE-DGFLYVTYRGENTFG 339
            FK+E  LE+R   +A ++  YPDRIPVIVEK  RS++P ++K+KYLVP ++ VGQF++++R R+ LS   A+F+FV+N LP T  +M ++YE  KDE DGFLY+ Y  E TFG
Sbjct:    6 FKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of CF832710 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 60/119 (50.42%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    4 FKQELDLEKRRA*AARIMEKYPDRIPVIVEKAHRSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVD-NVLPPTGAIMSAIYEQKKDEDGFLYVTYRGENTFGSHV 348
            FKQE  LEKR+  +++I  +Y DR+P+IVE+A  SD+P+I+KKK+L P+++ +  F+  IRK +  S    +KAIF+FV+ N LPP+  ++S+IY+  KDEDGFLY+ Y GENTFGS +
Sbjct:    8 FKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFGSDI 126          
The following BLAST results are available for this feature:
BLAST of CF832710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8I_ARATH1.008e-2951.79Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL1_XENTR1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.316e-2952.68Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8D_ORYSJ6.534e-2952.21Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8L_DICDI3.243e-2850.42Autophagy-related protein 8-like protein DDB_G0290... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832710 ID=CF832710; Name=CF832710; organism=Citrus sinensis; type=EST; length=683bp
TACTTCAAGCAAGAGCTTGATCTTGAGAAGAGACGCGCATAGGCTGCAAG
GATTATGGAGAAGTACCCTGACAGGATTCCGGTGATTGTGGAGAAGGCAC
ATAGAAGTGACATACCAAATATAGATAAGAAGAAGTATCTTGTTCCAGCT
GACCTGACTGTAGGACAATTTGTCTATGTCATCCGTAAAAGGATCAAACT
GAGTGCTGAAAAGGCGATATTTATTTTTGTGGATAATGTGCTCCCACCTA
CAGGTGCTATTATGTCTGCCATATACGAACAGAAAAAGGATGAAGATGGT
TTTCTTTATGTGACTTACAGGGGGGAGAACACATTTGGAAGCCACGTCCC
AGTTTACCCTTGTGATTATCTATCTGCTCATTGTGTGGTTTCTTGTGCGA
CCGCATTTTTATCTCAATTGTCATCCTTGCTTTCCGCTGAATATTCCTTT
ATCGGGCATATTTTATATTTTATAAAGACATTGCCAGTGATAATATGTAC
AGTTACCTATTGTATATAATTCTTACAGGCATAATATGTCAAGTTTCTTT
CTTGCCTTTCTATTTTGATGATTTTTTTTCGGTTAGGGTATTTGCTGCTG
GTTTCGATCTGTAATCTTTATCACGAAATACTTGACTTGGAACCCGGATT
CTGCGTGTTTGTGAGCCATTGCTATTTTTAAGA
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