CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BACLD (Xylose isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=xylA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = -3
Query:  303 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQE 704
            G+IDAN GD  +GWDTD+F TD+  A L M  ++K GG   GG NFDAK+RR S   EDLF AHI GMDT A GL+ A++L+ED +L +++ +RY+S+   IG +I+ G+ D + L   A+E    +  S +QE
Sbjct:  291 GSIDANQGDLLLGWDTDEFPTDLYSAVLAMYEILKAGGFKTGGINFDAKVRRPSFADEDLFHAHIAGMDTYAVGLKVASRLLEDKALDQVIEERYESYTKGIGLEIKEGRTDLKKLAAYALENDHIENQSGRQE 424          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ENTS8 (Xylose isomerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=xylA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 64/138 (46.38%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK++E+G L + V +RY  ++ E+GQ+I  G+     L + A +    P+  S  QE  E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKVAAKMLEEGELDKRVARRYAGWNGELGQQILKGQMTLAELAQYAEQHNLAPQHQSGHQEQLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_LACLA (Xylose isomerase OS=Lactococcus lactis subsp. lactis GN=xylA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 66/126 (52.38%), Postives = 87/126 (69.05%), Query Frame = -3
Query:  330 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSF-DSEIGQKIEAGKADFEMLEKKAMEWGE 704
            G+IDAN G+  +GWDTD+F T + + TL M  ++ NGGL  GG NFDAK+RR S   EDL +AHI GMDT AR L+ AA +IED  L ++V +RY S+ ++E+GQ IE G A FE L   A+E G+
Sbjct:  293 GSIDANQGNYLLGWDTDEFPTLVIDITLAMHQILLNGGLGKGGINFDAKVRRTSFKAEDLILAHIAGMDTYARALKGAAAIIEDKFLSDIVDERYTSYKNTEVGQSIENGTATFESLAAFALEHGD 418          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURTA (Xylose isomerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=xylA PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29
Identity = 68/145 (46.90%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  HI  +D +A  L  AA L+E+  L  L R+RY  +DSE G+KI AG    + L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAIDVLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAGGYSLQSLAADALARGVNPQHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALTY (Xylose isomerase OS=Salmonella typhimurium GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALSV (Xylose isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALPC (Xylose isomerase OS=Salmonella paratyphi C (strain RKS4594) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALPB (Xylose isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALNS (Xylose isomerase OS=Salmonella newport (strain SL254) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALHS (Xylose isomerase OS=Salmonella heidelberg (strain SL476) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_BACLD5.310e-2947.76Xylose isomerase OS=Bacillus licheniformis (strain... [more]
XYLA_ENTS86.935e-2946.38Xylose isomerase OS=Enterobacter sakazakii (strain... [more]
XYLA_LACLA9.057e-2952.38Xylose isomerase OS=Lactococcus lactis subsp. lact... [more]
XYLA_BURTA9.057e-2946.90Xylose isomerase OS=Burkholderia thailandensis (st... [more]
XYLA_SALTY1.183e-2847.10Xylose isomerase OS=Salmonella typhimurium GN=xylA... [more]
XYLA_SALSV1.183e-2847.10Xylose isomerase OS=Salmonella schwarzengrund (str... [more]
XYLA_SALPC1.183e-2847.10Xylose isomerase OS=Salmonella paratyphi C (strain... [more]
XYLA_SALPB1.183e-2847.10Xylose isomerase OS=Salmonella paratyphi B (strain... [more]
XYLA_SALNS1.183e-2847.10Xylose isomerase OS=Salmonella newport (strain SL2... [more]
XYLA_SALHS1.183e-2847.10Xylose isomerase OS=Salmonella heidelberg (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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