CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALCH (Xylose isomerase OS=Salmonella choleraesuis GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALA4 (Xylose isomerase OS=Salmonella agona (strain SL483) GN=xylA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 65/138 (47.10%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA1_XANAC (Xylose isomerase 1 OS=Xanthomonas axonopodis pv. citri GN=xylA1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+ Q GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L +   +RY SFDS  G    AGK     L K A     P+  S +QE  E
Sbjct:  297 GSIDANRGNAQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDSGAGADFAAGKTTLADLAKHA-AGNAPQQISGRQEAYE 432          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALTI (Xylose isomerase OS=Salmonella typhi GN=xylA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADF-EMLEKKAMEWGEPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++ E+GQ+I  G+    E+ +        P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNGELGQQILKGQLSLGELAQYAEQHHLAPVHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_KLEPN (Xylose isomerase OS=Klebsiella pneumoniae GN=xylA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 64/138 (46.38%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADF-EMLEKKAMEWGEPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E  L+M  + K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + V +RY  ++ E+GQ+I  G+    ++ +  A     P+  S +QE  E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNRVEEDALVMYEIFKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMAVSLKVAARMIEDGELDKRVARRYAGWNGELGQQILNGQMTLSDIAQYAAQHQLAPQHRSGQQEQLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURXL (Xylose isomerase OS=Burkholderia xenovorans (strain LB400) GN=xylA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++K+GG   GG NFD+K+RR+S D EDLF  HI  +D +A  +  AA LIE+  L +  R+RY  +D++ G+KI +G      L   A+  G  P+  S  QEL E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILKHGGFTTGGMNFDSKVRRQSVDPEDLFYGHIGAIDNLALAVERAAVLIENDRLDQFKRQRYAGWDADFGRKILSGDYSLSTLATDALARGLNPQHASGHQELMENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURA4 (Xylose isomerase OS=Burkholderia ambifaria (strain MC40-6) GN=xylA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.442e-28
Identity = 65/145 (44.83%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   GQKI +G    + L + A+  G +P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGQKILSGGYTLQSLAEDALARGVDPRHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_STAXY (Xylose isomerase OS=Staphylococcus xylosus GN=xylA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.495e-28
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  345 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKA 704
            G++DAN G P +GWDTD+  TD+ + TL M  ++KNGGLAPGG NFDAK RR S   EDL + HI GMDT A GLR A K+IED     ++ ++Y+SF+  IG+KI  G+   + LE  A
Sbjct:  290 GSVDANQGHPLLGWDTDES-TDVYDTTLAMYEILKNGGLAPGGLNFDAKPRRTSFKQEDLILTHIAGMDTFALGLRVAYKMIEDNFFENIMDEKYKSFNEGIGKKIVEGETSLKELEDYA 408          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURCM (Xylose isomerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=xylA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 65/145 (44.83%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   GQKI +G    + L   A+  G +P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGQKILSGGYTLQSLADDALARGVDPRHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURCJ (Xylose isomerase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=xylA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.871e-28
Identity = 66/145 (45.52%), Postives = 86/145 (59.31%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   G+KI AG    E L   A+  G +P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSIDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILAGGYTLESLAADALARGVDPQHASGAQERLENIVNQAI 436          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_SALCH1.183e-2847.10Xylose isomerase OS=Salmonella choleraesuis GN=xyl... [more]
XYLA_SALA41.183e-2847.10Xylose isomerase OS=Salmonella agona (strain SL483... [more]
XYLA1_XANAC1.183e-2851.09Xylose isomerase 1 OS=Xanthomonas axonopodis pv. c... [more]
XYLA_SALTI2.018e-2846.38Xylose isomerase OS=Salmonella typhi GN=xylA PE=3 ... [more]
XYLA_KLEPN2.018e-2846.38Xylose isomerase OS=Klebsiella pneumoniae GN=xylA ... [more]
XYLA_BURXL3.442e-2844.83Xylose isomerase OS=Burkholderia xenovorans (strai... [more]
XYLA_BURA43.442e-2844.83Xylose isomerase OS=Burkholderia ambifaria (strain... [more]
XYLA_STAXY4.495e-2851.67Xylose isomerase OS=Staphylococcus xylosus GN=xylA... [more]
XYLA_BURCM5.871e-2844.83Xylose isomerase OS=Burkholderia ambifaria (strain... [more]
XYLA_BURCJ5.871e-2845.52Xylose isomerase OS=Burkholderia cepacia (strain J... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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