CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SOLUE (Xylose isomerase OS=Solibacter usitatus (strain Ellin6076) GN=xylA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 64/138 (46.38%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G+ID N GDPQ GWDTDQF  D+ E T  +  ++  GG   GG NFDAK+RR+S +  DLF AH+  +DTVA+GL  AA +IE G L  +V++RY  +  E+G+ I  GK   E L   A+  G  P+  S +QE+ E
Sbjct:  294 GSIDMNRGDPQNGWDTDQFPNDVREITTALYYILLGGGFTTGGNNFDAKVRRQSFEPADLFYAHVGAVDTVAQGLINAAAMIEGGQLAGIVKERYAGWQGELGRAILDGKMSLEALSDGAVAEGITPRPRSGRQEMIE 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_MARMS (Xylose isomerase OS=Marinomonas sp. (strain MWYL1) GN=xylA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27
Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF T + E TL+   ++K+GG   GG+ FD KLRR+S D+EDLF  HI  MDT+A  L  A K+IED  L  +V +RY  ++  +G  I AGK   + L + A +   +P+  S +QE+ E
Sbjct:  293 GSVDANQGDAQLGWDTDQFPTSVEEYTLVTYEILKSGGFKTGGYMFDTKLRRQSMDLEDLFHGHIGAMDTLALSLERAVKMIEDEKLANIVDQRYAKWNDSLGADILAGKHTLQDLAEYAEKNNIDPQPVSGRQEMLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_FERGO (Xylose isomerase OS=Fervidobacterium gondwanense GN=xylA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 67/144 (46.53%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 704
            G+IDAN GD  +GWDTDQF TD+ E T  M  V++N GL   GFNFDAK+RR S D ED+  AH+  MD  A GL+ A KL E   +  ++ +RY  ++SEIG KI  GK   + L     +  + +V S KQEL EM+    I
Sbjct:  289 GSIDANRGDLLLGWDTDQFPTDVYETTFAMYEVLENNGL-DCGFNFDAKVRRASIDPEDIVYAHVSSMDAFALGLKLAVKLRE--KVKPMIEERYSEYNSEIGMKILEGKTTLDELSSYVEDLTDVRVKSLKQELLEMVINDVI 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURCH (Xylose isomerase OS=Burkholderia cenocepacia (strain HI2424) GN=xylA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   G+KI +G    E L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSIDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILSGGYTLESLAADALARGVNPRHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURCC (Xylose isomerase OS=Burkholderia cenocepacia (strain MC0-3) GN=xylA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   G+KI +G    E L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSIDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILSGGYTLESLAADALARGVNPRHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURCA (Xylose isomerase OS=Burkholderia cenocepacia (strain AU 1054) GN=xylA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   G+KI +G    E L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSIDPEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILSGGYTLESLAADALARGVNPRHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_LACBA (Xylose isomerase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=xylA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.231e-27
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = -3
Query:  339 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAME 704
            G++DAN GD  +GWD D++ +++ E T  M  V++NG + P GG NFDAK RR S   EDLF+ HIVGMD+ A GLR AA + +DG L  L   RY S+ S +G  IE+GKAD + LE  A++
Sbjct:  295 GSLDANQGDKLIGWDIDEYPSNLYETTAAMYEVVENGSIGPRGGLNFDAKPRRSSFAPEDLFLGHIVGMDSFAAGLRVAAAMKQDGFLDSLKADRYSSYKSGVGADIESGKADLKSLEAYAID 417          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURM1 (Xylose isomerase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=xylA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 64/145 (44.14%), Postives = 85/145 (58.62%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S D EDLF  H+  +D +A  L  AA L+E+  L  + R+RY  +D   G+KI +G    E L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFYGHVGAIDVLALALERAAVLVENDRLEAMRRQRYAQWDDAFGRKILSGGYTLESLAADALARGVNPQHASGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_LACBR (Xylose isomerase OS=Lactobacillus brevis GN=xylA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = -3
Query:  339 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAME 704
            G++DAN GD  +GWD D++ +++ E T  M  V++NG + P GG NFDAK RR +   EDLF+ HIVGMD+ A GLR AA + +DG L  L   RY S+ S +G  IE+GKAD + LE  A++
Sbjct:  295 GSLDANQGDKLIGWDIDEYPSNLYETTAAMYEVVENGSIGPRGGLNFDAKPRRSAFAPEDLFLGHIVGMDSFAAGLRVAAAMKQDGFLDNLKADRYSSYKSGVGADIESGKADLKSLEAYAID 417          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SILST (Xylose isomerase OS=Silicibacter sp. (strain TM1040) GN=xylA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKA-MEWGEPKVPSAKQELAE 704
            G+ID N  D Q GWDTDQF  +  E  L    ++K+GG   GG NFDAKLRR+S D EDL +AHI GMD  ARG + AA +IEDG+L + V  RY  + ++  Q + AGK   + + K+   E   PK  S +QE  E
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNTPEVALAYYHILKHGGFTTGGTNFDAKLRRQSIDAEDLLMAHIGGMDICARGFKAAAAMIEDGTLDQFVTDRYAGWQTDPAQDMLAGKLSLDEIAKRVEAEDINPKPRSGRQEYLE 429          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_SOLUE1.001e-2746.38Xylose isomerase OS=Solibacter usitatus (strain El... [more]
XYLA_MARMS1.001e-2745.65Xylose isomerase OS=Marinomonas sp. (strain MWYL1)... [more]
XYLA_FERGO1.308e-2746.53Xylose isomerase OS=Fervidobacterium gondwanense G... [more]
XYLA_BURCH1.708e-2744.83Xylose isomerase OS=Burkholderia cenocepacia (stra... [more]
XYLA_BURCC1.708e-2744.83Xylose isomerase OS=Burkholderia cenocepacia (stra... [more]
XYLA_BURCA1.708e-2744.83Xylose isomerase OS=Burkholderia cenocepacia (stra... [more]
XYLA_LACBA2.231e-2749.59Xylose isomerase OS=Lactobacillus brevis (strain A... [more]
XYLA_BURM12.914e-2744.14Xylose isomerase OS=Burkholderia multivorans (stra... [more]
XYLA_LACBR4.970e-2748.78Xylose isomerase OS=Lactobacillus brevis GN=xylA P... [more]
XYLA_SILST6.491e-2746.38Xylose isomerase OS=Silicibacter sp. (strain TM104... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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