CF832741
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_NOVAD (Xylose isomerase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=xylA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27 Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = -3 Query: 381 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEA 704 G+IDAN GD Q GWDTDQF + E TL ML +I+ GG GGFNFDAK+RR+S D DLF HI G+DT+A L AA LIEDG L +RY + E+G+KI A Sbjct: 294 GSIDANRGDHQNGWDTDQFPNSVEELTLAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIHA 401
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURVG (Xylose isomerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=xylA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26 Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = -3 Query: 273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704 G++DAN GDPQ GWDTDQF + E TL ++++GG GG NFDAK+RR+S EDLF H+ +D +A L AA L+E+ L L R+RY +D G+KI +G + L A+ G P+ S QE E I AI Sbjct: 292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVAAEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILSGGYTLQSLADDALARGVNPQHVSGAQERLENIVNQAI 436
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_AGRRK (Xylose isomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=xylA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26 Identity = 66/144 (45.83%), Postives = 85/144 (59.03%), Query Frame = -3 Query: 288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE-----PKVPSAKQELAEMI 704 G+ID N D Q GWDTDQF ++ E +L V+ GG GG NFD+KLRR+S D DL I HI GMD ARGL+ AAK+IED +L + + RY +DS GQK+ G+ + + +W E P+ S KQEL E I Sbjct: 292 GSIDMNRNDYQSGWDTDQFPNNVPEMSLAYYQVLAGGGFKSGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAAKMIEDKALSQPLADRYAGWDSAEGQKLLRGEYSLDQI----AQWVEAKDINPQPKSGKQELLENI 431
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURP8 (Xylose isomerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=xylA PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26 Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = -3 Query: 273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704 G++DAN GD Q GWDTDQF + E TL +++NGG GG NFDAK+RR+S D ED+ HI +D +A L AA LIE L ++RY +DS+ G+KI AG E L A++ P+ S +QE E I AI Sbjct: 292 GSVDANRGDAQNGWDTDQFPNSVEELTLAFYEILRNGGFTTGGMNFDAKVRRQSIDPEDIVHGHIGAIDVLAVALERAAHLIEHDRLAAFKQQRYAGWDSDFGRKILAGGYSLESLASDAVQRNIAPRHVSGQQERLENIVNQAI 436
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BIFAA (Xylose isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=xylA PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26 Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = -3 Query: 312 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSA 704 G++DAN GD +GWD D+F TD+ E + +M V+ G + P GG NFDAK RR S EDLF +HI GMD+ A GL AAK+ ED + L +RY SFDS IG +E G A LE+ A++ + K+ A Sbjct: 294 GSLDANQGDKLIGWDMDEFPTDLYETSTVMWEVLAEGQIGPHGGLNFDAKPRRTSFTAEDLFRSHIAGMDSFAAGLLVAAKMHEDKVIENLQAERYSSFDSGIGATVENGTASLASLEEYALDIPQSKLIEA 425
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHILO (Xylose isomerase OS=Rhizobium loti GN=xylA PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25 Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = -3 Query: 288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFE-MLEKKAMEWGEPKVPSAKQELAEMI 704 G+ID N D Q GWDTDQF ++ E L +++ GG GG NFDAKLRR+S D +DL I HI GMD ARGL+ AA+++ED +L + +RY ++S G+ + +GK E + E+ + EP+ S +QEL E I Sbjct: 297 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQILQAGGFKTGGTNFDAKLRRQSLDPQDLLIGHIGGMDACARGLKAAARMVEDKALSAPLAERYAGWNSAEGKAMLSGKRTLEDIAERVVKKKIEPQPRSGRQELLENI 436
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SILPO (Xylose isomerase OS=Silicibacter pomeroyi GN=xylA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25 Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = -3 Query: 294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704 G+ID N D Q GWDTDQF ++ E L +++ GG GG NFDAKLRR+S D DL AH+ GMD ARGL+ AA +IEDG L +R RY +DS+ GQ I D A E +P+ S +QE+ E Sbjct: 292 GSIDMNRNDYQSGWDTDQFPNNVPEVALCYYHILRAGGFTTGGTNFDAKLRRQSLDATDLIAAHVGGMDICARGLKAAAAMIEDGGLETALRDRYAGWDSDHGQGILESDLDSLFARVLAGEI-DPQPHSGRQEMLE 427
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSE14 (Xylose isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=xylA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25 Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = -3 Query: 294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704 G+IDAN GDPQ GWDTDQF + E TL ++K GG GG+NFD+K+RR+S D DLF H+ MD +A L AA ++++ L + +RY + G+ + AG+ E L K A + P+ S +QEL E Sbjct: 292 GSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFTNGGYNFDSKVRRQSLDEVDLFHGHVAAMDVLALALERAAAMVQNDKLQQFKDQRYAGWQQPFGKSLLAGEFSLESLAKHAFDKDLNPQAVSGRQELLE 429
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SINMW (Xylose isomerase OS=Sinorhizobium medicae (strain WSM419) GN=xylA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25 Identity = 63/140 (45.00%), Postives = 83/140 (59.29%), Query Frame = -3 Query: 288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704 G+ID N D Q GWDTDQF ++ E L V+ GG GG NFDAKLRR+S D EDL I HI GMD ARGL+ AAK+IED +L + +RY ++ QK+ G E +E + ++ P+ S +QEL E + Sbjct: 292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQGGFSLEEIEARVLKADVNPQPKSGRQELLENV 431
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSEPF (Xylose isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=xylA PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25 Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = -3 Query: 288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAM-EWGEPKVPSAKQELAEMI 704 G+IDAN GDPQ GWDTDQF + E TL+ ++K GG GGFNFD+K+RR+S D DLF H+ MD +A L AA ++++ L L +RY + GQ + AG + + L + A P+ S +QE+ E + Sbjct: 292 GSIDANRGDPQNGWDTDQFPNSVEEMTLVTYEILKAGGFGNGGFNFDSKVRRQSLDETDLFHGHVGAMDVLALSLERAAAMVQNDQLQRLKDQRYAGWQQPFGQSVLAGDFNLQSLAEHAFANELNPQAVSGRQEMLENV 431 The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 172
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bpback to top |