CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_NOVAD (Xylose isomerase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=xylA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = -3
Query:  381 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEA 704
            G+IDAN GD Q GWDTDQF   + E TL ML +I+ GG   GGFNFDAK+RR+S D  DLF  HI G+DT+A  L  AA LIEDG L     +RY  +  E+G+KI A
Sbjct:  294 GSIDANRGDHQNGWDTDQFPNSVEELTLAMLELIRAGGFTDGGFNFDAKVRRQSIDAADLFHGHIGGIDTIAHALVKAAALIEDGKLDAFRAERYAGWQGELGRKIHA 401          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURVG (Xylose isomerase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=xylA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GDPQ GWDTDQF   + E TL    ++++GG   GG NFDAK+RR+S   EDLF  H+  +D +A  L  AA L+E+  L  L R+RY  +D   G+KI +G    + L   A+  G  P+  S  QE  E I   AI
Sbjct:  292 GSVDANRGDPQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVAAEDLFYGHVGAIDVLALALERAAVLVENDRLDALRRQRYAQWDDAFGRKILSGGYTLQSLADDALARGVNPQHVSGAQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_AGRRK (Xylose isomerase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=xylA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 66/144 (45.83%), Postives = 85/144 (59.03%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE-----PKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E +L    V+  GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AAK+IED +L + +  RY  +DS  GQK+  G+   + +     +W E     P+  S KQEL E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMSLAYYQVLAGGGFKSGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAAKMIEDKALSQPLADRYAGWDSAEGQKLLRGEYSLDQI----AQWVEAKDINPQPKSGKQELLENI 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BURP8 (Xylose isomerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=xylA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.495e-26
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G++DAN GD Q GWDTDQF   + E TL    +++NGG   GG NFDAK+RR+S D ED+   HI  +D +A  L  AA LIE   L    ++RY  +DS+ G+KI AG    E L   A++    P+  S +QE  E I   AI
Sbjct:  292 GSVDANRGDAQNGWDTDQFPNSVEELTLAFYEILRNGGFTTGGMNFDAKVRRQSIDPEDIVHGHIGAIDVLAVALERAAHLIEHDRLAAFKQQRYAGWDSDFGRKILAGGYSLESLASDAVQRNIAPRHVSGQQERLENIVNQAI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BIFAA (Xylose isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=xylA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = -3
Query:  312 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSA 704
            G++DAN GD  +GWD D+F TD+ E + +M  V+  G + P GG NFDAK RR S   EDLF +HI GMD+ A GL  AAK+ ED  +  L  +RY SFDS IG  +E G A    LE+ A++  + K+  A
Sbjct:  294 GSLDANQGDKLIGWDMDEFPTDLYETSTVMWEVLAEGQIGPHGGLNFDAKPRRTSFTAEDLFRSHIAGMDSFAAGLLVAAKMHEDKVIENLQAERYSSFDSGIGATVENGTASLASLEEYALDIPQSKLIEA 425          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHILO (Xylose isomerase OS=Rhizobium loti GN=xylA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.599e-25
Identity = 62/140 (44.29%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFE-MLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    +++ GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++ED +L   + +RY  ++S  G+ + +GK   E + E+   +  EP+  S +QEL E I
Sbjct:  297 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQILQAGGFKTGGTNFDAKLRRQSLDPQDLLIGHIGGMDACARGLKAAARMVEDKALSAPLAERYAGWNSAEGKAMLSGKRTLEDIAERVVKKKIEPQPRSGRQELLENI 436          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SILPO (Xylose isomerase OS=Silicibacter pomeroyi GN=xylA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 63/137 (45.99%), Postives = 80/137 (58.39%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+ID N  D Q GWDTDQF  ++ E  L    +++ GG   GG NFDAKLRR+S D  DL  AH+ GMD  ARGL+ AA +IEDG L   +R RY  +DS+ GQ I     D       A E  +P+  S +QE+ E
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEVALCYYHILRAGGFTTGGTNFDAKLRRQSLDATDLIAAHVGGMDICARGLKAAAAMIEDGGLETALRDRYAGWDSDHGQGILESDLDSLFARVLAGEI-DPQPHSGRQEMLE 427          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSE14 (Xylose isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=xylA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.088e-25
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G+IDAN GDPQ GWDTDQF   + E TL    ++K GG   GG+NFD+K+RR+S D  DLF  H+  MD +A  L  AA ++++  L +   +RY  +    G+ + AG+   E L K A +    P+  S +QEL E
Sbjct:  292 GSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFTNGGYNFDSKVRRQSLDEVDLFHGHVAAMDVLALALERAAAMVQNDKLQQFKDQRYAGWQQPFGKSLLAGEFSLESLAKHAFDKDLNPQAVSGRQELLE 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SINMW (Xylose isomerase OS=Sinorhizobium medicae (strain WSM419) GN=xylA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 63/140 (45.00%), Postives = 83/140 (59.29%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D EDL I HI GMD  ARGL+ AAK+IED +L   + +RY  ++    QK+  G    E +E + ++    P+  S +QEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEERYAGWNELEAQKMLQGGFSLEEIEARVLKADVNPQPKSGRQELLENV 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSEPF (Xylose isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=xylA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAM-EWGEPKVPSAKQELAEMI 704
            G+IDAN GDPQ GWDTDQF   + E TL+   ++K GG   GGFNFD+K+RR+S D  DLF  H+  MD +A  L  AA ++++  L  L  +RY  +    GQ + AG  + + L + A      P+  S +QE+ E +
Sbjct:  292 GSIDANRGDPQNGWDTDQFPNSVEEMTLVTYEILKAGGFGNGGFNFDSKVRRQSLDETDLFHGHVGAMDVLALSLERAAAMVQNDQLQRLKDQRYAGWQQPFGQSVLAGDFNLQSLAEHAFANELNPQAVSGRQEMLENV 431          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_NOVAD8.477e-2755.56Xylose isomerase OS=Novosphingobium aromaticivoran... [more]
XYLA_BURVG2.467e-2643.45Xylose isomerase OS=Burkholderia vietnamiensis (st... [more]
XYLA_AGRRK4.207e-2645.83Xylose isomerase OS=Agrobacterium radiobacter (str... [more]
XYLA_BURP85.495e-2644.14Xylose isomerase OS=Burkholderia phymatum (strain ... [more]
XYLA_BIFAA7.177e-2646.97Xylose isomerase OS=Bifidobacterium adolescentis (... [more]
XYLA_RHILO1.599e-2544.29Xylose isomerase OS=Rhizobium loti GN=xylA PE=3 SV... [more]
XYLA_SILPO2.088e-2545.99Xylose isomerase OS=Silicibacter pomeroyi GN=xylA ... [more]
XYLA_PSE142.088e-2542.03Xylose isomerase OS=Pseudomonas syringae pv. phase... [more]
XYLA_SINMW2.727e-2545.00Xylose isomerase OS=Sinorhizobium medicae (strain ... [more]
XYLA_PSEPF3.562e-2541.43Xylose isomerase OS=Pseudomonas fluorescens (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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