CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_MESSB (Xylose isomerase OS=Mesorhizobium sp. (strain BNC1) GN=xylA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEML-EKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  +  EA L    +++ GG   GG NFDAKLRR+S D EDL  AHI GMD  A+GL+ AA++IED +L   + +RY  +++   Q +  G+   E + E+ A E  +PK  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNAPEAALAYYYILQAGGFTTGGTNFDAKLRRQSLDPEDLVAAHIGGMDICAQGLKAAARMIEDKALSGPLEERYSGWNATEAQAMLKGERSLEAIAERVARENLDPKPRSGRQEKLENI 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUO2 (Xylose isomerase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=xylA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 58/139 (41.73%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ +A+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKASARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_AGRT5 (Xylose isomerase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=xylA PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  363 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFE 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFD+KLRR+S D +DL I HI GMD  ARGL+ AAK+IEDG+L + + +RY  +DS   QK+  G+   E
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKNGGTNFDSKLRRQSLDPQDLLIGHIGGMDCCARGLKAAAKMIEDGALSKPLSERYAKWDSPEAQKMLRGELKLE 405          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_OCHA4 (Xylose isomerase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=xylA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 58/139 (41.73%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA ++EDG+L + + +RY  ++ + G+K+  G +  ++  +   +   P+  S +QE  E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAAAMLEDGALSKPLDERYAGWNGDFGKKLLTGLSLDQITAEVETKDINPQPKSGRQEYLENV 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHIEC (Xylose isomerase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=xylA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 63/144 (43.75%), Postives = 82/144 (56.94%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE-----PKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AAK+IED +L + +  RY  ++S   QK+  G+   +    +   W E     P+  S KQEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAAKMIEDKALSQPLADRYAGWESVEAQKLFRGEYSLD----EIANWVESKDVNPQPKSGKQELLENV 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSEU2 (Xylose isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=xylA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 58/138 (42.03%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAM-EWGEPKVPSAKQELAE 704
            G+IDAN GDPQ GWDTDQF   + E TL    ++K GG   GGFNFD+K+RR+S D  DLF  H+  MD +A  L  AA ++++  L     +RY  +    GQ + AG+     L + A      P+  S +QEL E
Sbjct:  292 GSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFTNGGFNFDSKVRRQSLDDIDLFHGHVAAMDVLALALERAAAMLQNDKLQHFKDQRYAGWQQPFGQSVLAGEFSLASLAEHAFANELNPQAVSGRQELLE 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSEFS (Xylose isomerase OS=Pseudomonas fluorescens (strain SBW25) GN=xylA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.143e-24
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G+IDAN GDPQ GWDTDQF   + E TL    ++K GG   GG+NFD+K+RR+S D  DLF  H+  MD +A  L  AA ++++  L +   +RY  +   +GQ + AG+     L + A      P+  S +QE+ E
Sbjct:  292 GSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFKNGGYNFDSKVRRQSLDDVDLFHGHVAAMDVLALALERAAAMVQNDRLQQFKDQRYAGWQQPLGQAVLAGEFSLASLAEHAFAHELNPQAVSGRQEMLE 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHIME (Xylose isomerase OS=Rhizobium meliloti GN=xylA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 62/140 (44.29%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D EDL I HI GMD  ARGL+ AAK+IED +L   +  RY  ++    +K+  G    E +E   ++    P+  S +QEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMIEDKALSAPLEARYAGWNVPEAKKMLDGGFSLEEIEAWVLKSDVNPQPKSGRQELLENV 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHIL3 (Xylose isomerase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=xylA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 61/140 (43.57%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AAK+IED +L + +  RY  ++S   QK+  G+   + +          P+  S KQEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAAKMIEDKALSQPLADRYAGWESAEAQKLFRGEYSLDEITHYVESHDVNPQPRSGKQELLENV 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHILW (Xylose isomerase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=xylA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 62/144 (43.06%), Postives = 82/144 (56.94%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE-----PKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AA++IED +L + +  RY  ++S   QK+  G+   +    +   W E     P+  S KQEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDSKLRRQSLDPADLLIGHIGGMDCCARGLKAAARMIEDKALSQPLADRYAGWESAEAQKLFRGEYSLD----EITNWVETKDVNPQPRSGKQELLENV 431          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_MESSB1.768e-2445.00Xylose isomerase OS=Mesorhizobium sp. (strain BNC1... [more]
XYLA_BRUO21.768e-2441.73Xylose isomerase OS=Brucella ovis (strain ATCC 258... [more]
XYLA_AGRT51.768e-2450.00Xylose isomerase OS=Agrobacterium tumefaciens (str... [more]
XYLA_OCHA42.309e-2441.73Xylose isomerase OS=Ochrobactrum anthropi (strain ... [more]
XYLA_RHIEC5.143e-2443.75Xylose isomerase OS=Rhizobium etli (strain CFN 42 ... [more]
XYLA_PSEU25.143e-2442.03Xylose isomerase OS=Pseudomonas syringae pv. syrin... [more]
XYLA_PSEFS5.143e-2440.58Xylose isomerase OS=Pseudomonas fluorescens (strai... [more]
XYLA_RHIME6.717e-2444.29Xylose isomerase OS=Rhizobium meliloti GN=xylA PE=... [more]
XYLA_RHIL38.773e-2443.57Xylose isomerase OS=Rhizobium leguminosarum bv. vi... [more]
XYLA_RHILW1.146e-2343.06Xylose isomerase OS=Rhizobium leguminosarum bv. tr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
back to top