CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSESM (Xylose isomerase OS=Pseudomonas syringae pv. tomato GN=xylA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 56/138 (40.58%), Postives = 78/138 (56.52%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAM-EWGEPKVPSAKQELAE 704
            G+IDAN GDPQ GWDTDQF   + E TL    ++K GG   GG+NFD+K+RR+S D  DLF  H+  MD +A  L  AA ++++  L +   +RY  +    GQ + +G      L + A      P+  S +QEL E
Sbjct:  292 GSIDANRGDPQNGWDTDQFPNSVEEMTLATYEILKAGGFTHGGYNFDSKVRRQSLDDVDLFHGHVAAMDVLALSLERAAAMVQNDKLQQFKDQRYAGWQQPFGQSVLSGGFSLASLAEHAFANELNPQAVSGRQELLE 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BIFLO (Xylose isomerase OS=Bifidobacterium longum GN=xylA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = -3
Query:  339 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAME 704
            G++DAN GD  +GWD D+F TD+ E   +M  V++ G + P GG NFDAK RR S   EDLF +HI GMD  A GL  A K+ +DG +  L  +RY S+DS IG+ I+ G      LE  +++
Sbjct:  293 GSLDANQGDKLIGWDMDEFPTDLYETVAVMWEVLQAGSIGPHGGLNFDAKPRRTSFYEEDLFRSHIAGMDAYAAGLLVADKMNQDGFIQNLQAERYSSYDSGIGKDIDEGNVTLADLEAYSLD 415          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHOSK (Xylose isomerase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=xylA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 61/141 (43.26%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  285 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIF 704
            G+ID N  D Q GWDTDQF  +  E  L    +++ GG   GG NFDAK+RR+S D EDL +AH+ GMDT AR L+ AA+L EDGSL      RY  +++   Q + A  +  E +E + +  G  PK  S +QE  E ++
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPHNHPEMALAYYEILRAGGFTTGGTNFDAKIRRQSLDPEDLVLAHVGGMDTCARALKAAARLYEDGSLETARAARYAGWETPEAQAMLA--SSLEEIEARVLAEGINPKPRSGRQERLENLW 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHISN (Xylose isomerase OS=Rhizobium sp. (strain NGR234) GN=xylA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 63/142 (44.37%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLE---KKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D EDL I HI GMD  ARGL+ AAK++ED +L   + KRY  ++    +K+  G    + +E   +KA    +PK  S +QE  E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYHHVLSGGGFKTGGTNFDAKLRRQSIDPEDLLIGHIGGMDCCARGLKAAAKMVEDKALSGPLEKRYAGWNVPEAKKMLDGGFSLDEIEAWVRKADLNPQPK--SGRQEYLENV 431          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALPA (Xylose isomerase OS=Salmonella paratyphi A GN=xylA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  426 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRK 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + + K
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELGQQILK 385          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHOS4 (Xylose isomerase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=xylA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  285 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIF 704
            G+ID N  D Q GWDTDQF  +  E  L    +++ GG   GG NFDAK+RR+S D EDL +AH+ GMDT AR L+ AA+L EDGSL      RY  +++   Q + A  +  E +E + +  G  P+  S +QE  E ++
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPHNHPEMALAYYEILRAGGFTTGGTNFDAKIRRQSLDPEDLVLAHVGGMDTCARALKAAARLYEDGSLETARAARYAGWETPEAQAMLA--SSLEKIEARVLAEGINPEPRSGRQERLENLW 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHOS1 (Xylose isomerase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=xylA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = -3
Query:  285 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIF 704
            G+ID N  D Q GWDTDQF  +  E  L    +++ GG   GG NFDAK+RR+S D EDL +AH+ GMDT AR L+ AA+L EDGSL      RY  +++   Q + A  +  E +E + +  G  P+  S +QE  E ++
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPHNHPEMALAYYEILRAGGFTTGGTNFDAKIRRQSLDPEDLVLAHVGGMDTCARALKAAARLYEDGSLEAARAARYAGWETPEAQAMLA--SSLEEIEARVLAEGINPEPRSGRQERLENLW 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_AGRVS (Xylose isomerase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=xylA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAM-EWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V++ GG   GG NFD+KLRR+S D  DL I HI GMD  ARGL+ AAK++ED +L   +  RY  ++S+ G K        E +  +   E   P+  S +QEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLQAGGFTSGGTNFDSKLRRQSIDPADLLIGHIGGMDCCARGLKAAAKMVEDKALSGPLANRYAGWNSD-GAKAMLASGTLESIAARVEGENINPQPVSGQQELLENV 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ROSDO (Xylose isomerase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=xylA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = -3
Query:  387 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V++ GG   GG NFDAKLRR+S D  DL +AH+ GMD  A GL+ AA ++EDG L      RY  +   +GQK+
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYEVLRAGGFDTGGTNFDAKLRRQSLDPADLILAHVGGMDACAAGLKAAAAMLEDGKLEAAREARYAGWSEGLGQKL 396          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHOS5 (Xylose isomerase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=xylA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 58/140 (41.43%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  285 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIF 704
            G+ID N  D Q GWDTDQF  +  E  L    V++ GG   GG NFDAK+RR+S D EDL +AH+ GMDT AR L+ AA+L EDGSL      RY  +++   + + +   + E+  +   E   P+  S +QE  E ++
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPNNHPEMALAYYEVLRAGGFTTGGTNFDAKIRRQSLDPEDLILAHVGGMDTCARALKAAARLYEDGSLERARADRYAGWETPEAKAMLSSSLE-EIEARVLAEDINPQPRSGRQERLENLW 429          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_PSESM1.954e-2340.58Xylose isomerase OS=Pseudomonas syringae pv. tomat... [more]
XYLA_BIFLO1.954e-2345.53Xylose isomerase OS=Bifidobacterium longum GN=xylA... [more]
XYLA_RHOSK2.552e-2343.26Xylose isomerase OS=Rhodobacter sphaeroides (strai... [more]
XYLA_RHISN4.354e-2344.37Xylose isomerase OS=Rhizobium sp. (strain NGR234) ... [more]
XYLA_SALPA5.686e-2352.69Xylose isomerase OS=Salmonella paratyphi A GN=xylA... [more]
XYLA_RHOS45.686e-2342.55Xylose isomerase OS=Rhodobacter sphaeroides (strai... [more]
XYLA_RHOS17.427e-2342.55Xylose isomerase OS=Rhodobacter sphaeroides (strai... [more]
XYLA_AGRVS2.822e-2242.86Xylose isomerase OS=Agrobacterium vitis (strain S4... [more]
XYLA_ROSDO4.814e-2248.11Xylose isomerase OS=Roseobacter denitrificans (str... [more]
XYLA_RHOS54.814e-2241.43Xylose isomerase OS=Rhodobacter sphaeroides (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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