CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRAJA (Xylose isomerase OS=Bradyrhizobium japonicum GN=xylA PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = -3 
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704
            G++D N GD  +GWDTDQF  ++ E  L+   ++  GG   GG NFDAK+RR+S D +DL  AH+  MD  AR    AA +++ G+L   + KRY+ +    G+ I  G+     L  +A+  G +P+  S +QE  E +
Sbjct:  294 GSLDVNRGDDLLGWDTDQFAMNVPELALVFHEILNRGGFTSGGLNFDAKIRRQSIDPDDLIHAHVGSMDACARAFLAAADMLDAGALTAPLDKRYEGWAGPEGRAILGGQRSLADLADRALGPGFDPQPRSGRQEYLESL 433
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_DINSH (Xylose isomerase OS=Dinoroseobacter shibae (strain DFL 12) GN=xylA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 56/140 (40.00%), Postives = 76/140 (54.29%), Query Frame = -3 
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  +I E  L    +++ GG   GG NFD+KLRR+S D  DL  AH+  MD  A GL+ AA+++EDG L +    RY  + +   + +  G    E      ME G +P+  S  QE  E +
Sbjct:  291 GSIDMNRNDYQSGWDTDQFPNNIPEVALAYYEILRAGGFDTGGTNFDSKLRRQSLDPADLIAAHVAAMDVCAAGLKAAARMLEDGELEQRREDRYAGWRAPSAEAMLNG-GKLEDCFAHVMETGLDPQPVSGGQERLEAL 429
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_BRAJA4.814e-2237.86Xylose isomerase OS=Bradyrhizobium japonicum GN=xy... [more]
XYLA_DINSH3.450e-2040.00Xylose isomerase OS=Dinoroseobacter shibae (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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