CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ACTP7 (Xylose isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=xylA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 72/148 (48.65%), Postives = 99/148 (66.89%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFE----MLEKKAMEWGEPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GGFNFDAK+RR+STD  DLF  HI  +D +A  L+ AAK+IED +L  +V +RY  ++ ++GQ+I AGKA  E    ++E KA+   +PK  S +QE  E +  + I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGFNFDAKIRRQSTDPYDLFHGHIGAIDVLALSLKRAAKMIEDKTLQGIVDQRYAGWNGDLGQQILAGKASLEDLAKIVESKAL---DPKPVSGQQEYLENLVNNYI 437          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ACTP2 (Xylose isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=xylA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 72/148 (48.65%), Postives = 99/148 (66.89%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFE----MLEKKAMEWGEPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GGFNFDAK+RR+STD  DLF  HI  +D +A  L+ AAK+IED +L  +V +RY  ++ ++GQ+I AGKA  E    ++E KA+   +PK  S +QE  E +  + I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGFNFDAKIRRQSTDPYDLFHGHIGAIDVLALSLKRAAKMIEDKTLQGIVDQRYAGWNGDLGQQILAGKASLEDLAKIVESKAL---DPKPVSGQQEYLENLVNNYI 437          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ENTFA (Xylose isomerase OS=Enterococcus faecalis GN=xylA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD  +GWDTD+F T++ + TL M  +++NGG+ PGG NFD+K+RR S ++EDL +AHI GMDT ARGL++A KL ED    +L  +RY SF   IG KI +GK + E L   A++  EP + S+  E  + I
Sbjct:  291 GSIDANQGDVLLGWDTDEFPTNVYDVTLAMYEILENGGIEPGGINFDSKVRRSSFEMEDLLLAHIAGMDTFARGLKSAMKLKEDRFFEDLKEQRYSSFKKGIGAKIISGKENLESLTNYALKNDEPIIESSHIEYVKNI 429          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_CLOTS (Xylose isomerase OS=Clostridium thermosaccharolyticum GN=xylA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 68/125 (54.40%), Postives = 84/125 (67.20%), Query Frame = -3
Query:  330 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE 704
            G+IDANTGD  +GWDTDQF TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++D    + + +RY S+   IG  I +GKADF+ LEK A+E  E
Sbjct:  293 GSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDAEFDKFIEERYASYKDGIGADIVSGKADFKSLEKYALEHSE 417          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BACFR (Xylose isomerase OS=Bacteroides fragilis GN=xylA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 72/139 (51.80%), Postives = 89/139 (64.03%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD Q GWDTDQF  D  E T  M+ +I+N GL  GG NFDAK RR STD ED+FIAHI GMD +AR L +AA L+ +    +++  RY SFD+  G++ E GK   E L   A   GEPK  S +QEL E +
Sbjct:  295 GSIDANRGDYQNGWDTDQFPIDNFELTQAMMQIIRNDGLGNGGTNFDAKTRRNSTDPEDIFIAHIAGMDAMARALESAANLLNESPYQKMLSDRYASFDAGKGKEFEEGKLSLEELVAYAKANGEPKQTSGQQELYEAL 433          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BACFN (Xylose isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=xylA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 72/139 (51.80%), Postives = 89/139 (64.03%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD Q GWDTDQF  D  E T  M+ +I+N GL  GG NFDAK RR STD ED+FIAHI GMD +AR L +AA L+ +    +++  RY SFD+  G++ E GK   E L   A   GEPK  S +QEL E +
Sbjct:  295 GSIDANRGDYQNGWDTDQFPIDNFELTQAMMQIIRNDGLGNGGTNFDAKTRRNSTDPEDIFIAHIAGMDAMARALESAANLLNESPYQKMLSDRYASFDAGKGKEFEEGKLSLEELVAYAKANGEPKQTSGQQELYEAL 433          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_THEPX (Xylose isomerase OS=Thermoanaerobacter sp. (strain X514) GN=xylA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD  +GWDTDQ+ TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++DG     + +RY+S+   IG +I +GKA+F+ LE+ A+   + +  S KQEL E I
Sbjct:  292 GSIDANMGDMLLGWDTDQYPTDIRMTTLAMYEVIKMGGFNKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDGVFDRFIEERYKSYREGIGAEIVSGKANFKTLEEYALNNPKIENKSGKQELLESI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_THEP3 (Xylose isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=xylA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 70/139 (50.36%), Postives = 92/139 (66.19%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD  +GWDTDQ+ TDI   TL M  VIK GG   GG NFDAK+RR S + EDLF+ HI GMD  A+G + A KL++DG     + +RY+S+   IG +I +GKA+F+ LE+ A+   + +  S KQEL E I
Sbjct:  292 GSIDANMGDMLLGWDTDQYPTDIRMTTLAMYEVIKMGGFNKGGLNFDAKVRRASFEPEDLFLGHIAGMDAFAKGFKVAYKLVKDGVFDRFIEERYKSYREGIGAEIVSGKANFKTLEEYALNNPKIENKSGKQELLESI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_THEYO (Xylose isomerase OS=Thermoanaerobacter yonseii GN=xylA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.493e-31
Identity = 70/139 (50.36%), Postives = 93/139 (66.91%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN  D  +GWDTDQF TDI   TL M  VIK GG   GG NFDAK+RR S + EDLFIAHI GMD  A+G + A +L++DG   + + +RY+S+   IG +I +G+A+F+ LE+ A+   + +  S KQEL E I
Sbjct:  292 GSIDANMRDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFIAHIAGMDAFAKGFKVAYRLVKDGVFDKFIEERYKSYKEGIGAEIVSGRANFKTLEEYALNNPKIENKSGKQELLESI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_OCEIH (Xylose isomerase OS=Oceanobacillus iheyensis GN=xylA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = -3
Query:  300 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQEL 704
            G++DAN G P +GWDTD+F +DI   TL M  ++KN GL  GG NFDAK+RR S   EDLF AHI GMD+ A GL+ A +L++D  L  +V  RY+SF+  IG+ I +GK DF  LEK A+   E   PS + E+
Sbjct:  291 GSVDANQGHPLLGWDTDEFPSDIYTTTLAMYEILKNDGLGKGGLNFDAKVRRGSFTAEDLFHAHIAGMDSFAIGLKVAQRLMDDRVLENVVEDRYRSFNQGIGRDIVSGKTDFHQLEKHALTLSEITQPSGQLEV 425          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_ACTP73.929e-3248.65Xylose isomerase OS=Actinobacillus pleuropneumonia... [more]
XYLA_ACTP23.929e-3248.65Xylose isomerase OS=Actinobacillus pleuropneumonia... [more]
XYLA_ENTFA5.131e-3248.92Xylose isomerase OS=Enterococcus faecalis GN=xylA ... [more]
XYLA_CLOTS5.131e-3254.40Xylose isomerase OS=Clostridium thermosaccharolyti... [more]
XYLA_BACFR5.131e-3251.80Xylose isomerase OS=Bacteroides fragilis GN=xylA P... [more]
XYLA_BACFN5.131e-3251.80Xylose isomerase OS=Bacteroides fragilis (strain A... [more]
XYLA_THEPX6.701e-3250.36Xylose isomerase OS=Thermoanaerobacter sp. (strain... [more]
XYLA_THEP36.701e-3250.36Xylose isomerase OS=Thermoanaerobacter pseudethano... [more]
XYLA_THEYO1.493e-3150.36Xylose isomerase OS=Thermoanaerobacter yonseii GN=... [more]
XYLA_OCEIH1.950e-3150.37Xylose isomerase OS=Oceanobacillus iheyensis GN=xy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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