CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BACSU (Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.950e-31
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 704
            G++DAN G P +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + +DL  AHI GMD  ARGL+ A KLIED    ++++ RY+SF   IG +I  G+A+F  LE+ A+     K  S +QE  + I    I
Sbjct:  299 GSVDANQGHPLLGWDTDEFPTDLYSTTLAMYEILQNGGLGSGGLNFDAKVRRSSFEPDDLIYAHIAGMDAFARGLKVAHKLIEDRVFEDVIQHRYRSFTEGIGLEIIEGRANFHTLEQYALNHKSIKNESGRQEKLKAILNQYI 442          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_GEOKA (Xylose isomerase OS=Geobacillus kaustophilus GN=xylA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.547e-31
Identity = 66/150 (44.00%), Postives = 98/150 (65.33%), Query Frame = -3
Query:  255 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI*IAAAP 704
            G++DAN GD  +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +L+ED    + + +RY+S+   IG++I  G ADF+ LE+ A++ G+ +  S + E  + +    +   +AP
Sbjct:  291 GSVDANQGDTLLGWDTDEFPTDLYTTTLAMYEILQNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAIGLKVAHRLLEDRVFEQFIEERYKSYTEGIGREIVEGTADFKKLEEYALQLGDIRNTSGRLERLKTLLNQYLLEVSAP 440          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ACTSZ (Xylose isomerase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=xylA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.326e-31
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL +  ++K GGL  GG NFDAK+RR+S D  DLF AHI  +D +A  LR AAK++ED +L  +V +RY  ++ E+GQ+I  GK+  E L + A    EP+  S +QE  E +  S I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLAIYEILKAGGLTTGGLNFDAKIRRQSIDPYDLFHAHIGAIDVLALSLRRAAKMLEDQTLQHIVEQRYAGWNGELGQQILNGKSSLEALAQAAQHL-EPQPVSGQQEYLENLVNSYI 435          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERE8 (Xylose isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 69/138 (50.00%), Postives = 88/138 (63.77%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L + V +RY  + S++GQ+I  GK   E L   A +    P   S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENALVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAAKMIEDGQLDKQVAERYAGWSSDLGQQILKGKMSLEDLASYAEQHNLNPHHQSGHQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PSEA6 (Xylose isomerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 67/138 (48.55%), Postives = 94/138 (68.12%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G+IDAN GDPQ+GWDTDQF   + E +L++  ++K GG   GGFNFD KLRR+S+D +D+FIAHI GMD +A GL+ AA +IE+  L + V KRY  ++ E+G+ I+ G  + E L    ++   +PK  S +QEL E
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEELSLVIYEILKAGGFTSGGFNFDTKLRRQSSDPQDMFIAHIGGMDHLAIGLKKAALMIENDFLGQAVSKRYAGWNGELGKGIQGGDFNLESLANLCVDKNLQPKHVSGQQELLE 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_HAEIN (Xylose isomerase OS=Haemophilus influenzae GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 67/145 (46.21%), Postives = 94/145 (64.83%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K+GG   GGFNFDAK+RR+S D  DLF AHI  +D +A  L+ AAK++++ +L ++V +RY  ++SE+GQ I  GK   E L +   +    PK  S +QE  E +    I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQGKTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVI 437          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_HAEIG (Xylose isomerase OS=Haemophilus influenzae (strain PittGG) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 67/145 (46.21%), Postives = 94/145 (64.83%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K+GG   GGFNFDAK+RR+S D  DLF AHI  +D +A  L+ AAK++++ +L ++V +RY  ++SE+GQ I  GK   E L +   +    PK  S +QE  E +    I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQGKTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVI 437          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_HAEIE (Xylose isomerase OS=Haemophilus influenzae (strain PittEE) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 67/145 (46.21%), Postives = 94/145 (64.83%), Query Frame = -3
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K+GG   GGFNFDAK+RR+S D  DLF AHI  +D +A  L+ AAK++++ +L ++V +RY  ++SE+GQ I  GK   E L +   +    PK  S +QE  E +    I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKHGGFTTGGFNFDAKIRRQSIDPYDLFYAHIGAIDVLALSLKRAAKMLQEETLQKIVNERYAGWNSELGQHILQGKTSLETLAQLVQQKDLAPKPVSGQQEYLENLVNQVI 437          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_GEOTN (Xylose isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 66/152 (43.42%), Postives = 97/152 (63.82%), Query Frame = -3
Query:  249 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI*IAAAPKQ 704
            G++DAN GD  +GWDTD+F TD+   TL M  +++NGGL  GG NFDAK+RR S + EDLF AHI GMD+ A GL+ A +L+ED    + + +RY+S+   IG++I  G ADF  LE+ A++ GE +  S + E  + +    +   + P +
Sbjct:  291 GSVDANQGDMLLGWDTDEFPTDLYATTLAMYEILQNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSFAIGLKVAHRLLEDRVFEQFIEERYKSYTEGIGREIVEGTADFHKLEQYALQLGEIRNTSGRLERLKTLLNQYLLEVSVPSK 442          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ENT38 (Xylose isomerase OS=Enterobacter sp. (strain 638) GN=xylA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.344e-31
Identity = 69/138 (50.00%), Postives = 89/138 (64.49%), Query Frame = -3
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E  L+M  +IK GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + V KRY  ++SE+GQ+I  G+     + K A +    P   S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPISVEENALVMYEIIKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKVAARMIEDGELDKRVAKRYAGWNSELGQQILKGQLSLAEIAKYAEQHSLAPSHQSGHQELLE 430          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_BACSU1.950e-3147.22Xylose isomerase OS=Bacillus subtilis GN=xylA PE=3... [more]
XYLA_GEOKA2.547e-3144.00Xylose isomerase OS=Geobacillus kaustophilus GN=xy... [more]
XYLA_ACTSZ3.326e-3148.61Xylose isomerase OS=Actinobacillus succinogenes (s... [more]
XYLA_YERE84.344e-3150.00Xylose isomerase OS=Yersinia enterocolitica seroty... [more]
XYLA_PSEA64.344e-3148.55Xylose isomerase OS=Pseudoalteromonas atlantica (s... [more]
XYLA_HAEIN4.344e-3146.21Xylose isomerase OS=Haemophilus influenzae GN=xylA... [more]
XYLA_HAEIG4.344e-3146.21Xylose isomerase OS=Haemophilus influenzae (strain... [more]
XYLA_HAEIE4.344e-3146.21Xylose isomerase OS=Haemophilus influenzae (strain... [more]
XYLA_GEOTN4.344e-3143.42Xylose isomerase OS=Geobacillus thermodenitrifican... [more]
XYLA_ENT384.344e-3150.00Xylose isomerase OS=Enterobacter sp. (strain 638) ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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