CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO45 (Xylose isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO27 (Xylose isomerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO24 (Xylose isomerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA2_XANCP (Xylose isomerase 2 OS=Xanthomonas campestris pv. campestris GN=xylA2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 70/137 (51.09%), Postives = 84/137 (61.31%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L     +RY SFDS  G     G +    L   A   GEP   S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVADALLTSSPLETWRAQRYASFDSGAGADFANGTSTLADLATYAAGKGEPTQLSGRQEAYE 437
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA2_XANC8 (Xylose isomerase 2 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=xylA2 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 70/137 (51.09%), Postives = 84/137 (61.31%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L     +RY SFDS  G     G +    L   A   GEP   S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVADALLTSSPLETWRAQRYASFDSGAGADFANGTSTLADLATYAAGKGEPTQLSGRQEAYE 437
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA2_XANAC (Xylose isomerase 2 OS=Xanthomonas axonopodis pv. citri GN=xylA2 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L +   +RY SFDS  G    AGK     L K A     P+  S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDSGAGADFAAGKTTLADLAKHA-AGNAPQQISGRQEAYE 436
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PHOLL (Xylose isomerase OS=Photorhabdus luminescens subsp. laumondii GN=xylA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 66/145 (45.52%), Postives = 92/145 (63.45%), Query Frame = -3 
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEW-GEPKVPSAKQELAEMIFQSAI 704
            G+IDAN GD Q+GWDTDQF   + E +L+M  ++K GG   GG NFDAK+RR+S D++DLF  HI  +DT+A  L++A K++ DG L E V +RY  ++SE+G+ I  GK   + +   A     EPK  S +QEL E +    I
Sbjct:  293 GSIDANRGDAQLGWDTDQFPNSVEENSLVMYEILKAGGFTTGGLNFDAKVRRQSIDIDDLFYGHIGAIDTMALSLKSAVKILVDGKLDEYVAQRYSGWNSELGRDILEGKMTLDEVAHYAETLVQEPKHRSGQQELLENLINRYI 437
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOLI (Xylose isomerase OS=Escherichia coli (strain K12) GN=xylA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECODH (Xylose isomerase OS=Escherichia coli (strain K12 / DH10B) GN=xylA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOBW (Xylose isomerase OS=Escherichia coli (strain K12 / BW2952) GN=xylA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLE 430
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_ECO451.070e-2947.83Xylose isomerase OS=Escherichia coli O45:K1 (strai... [more]
XYLA_ECO271.070e-2947.83Xylose isomerase OS=Escherichia coli O127:H6 (stra... [more]
XYLA_ECO241.070e-2947.83Xylose isomerase OS=Escherichia coli O139:H28 (str... [more]
XYLA2_XANCP1.397e-2951.09Xylose isomerase 2 OS=Xanthomonas campestris pv. c... [more]
XYLA2_XANC81.397e-2951.09Xylose isomerase 2 OS=Xanthomonas campestris pv. c... [more]
XYLA2_XANAC1.397e-2951.82Xylose isomerase 2 OS=Xanthomonas axonopodis pv. c... [more]
XYLA_PHOLL1.825e-2945.52Xylose isomerase OS=Photorhabdus luminescens subsp... [more]
XYLA_ECOLI1.825e-2947.83Xylose isomerase OS=Escherichia coli (strain K12) ... [more]
XYLA_ECODH1.825e-2947.83Xylose isomerase OS=Escherichia coli (strain K12 /... [more]
XYLA_ECOBW1.825e-2947.83Xylose isomerase OS=Escherichia coli (strain K12 /... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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