CF832747

Overview
NameCF832747
Unique NameCF832747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  237 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 587
            ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  D+ K+   A  +T+KY
Sbjct:   31 NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.496e-24
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = -3
Query:  279 LKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 644
            L +L K+P    SAG + + D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ D+
Sbjct:   14 LAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 149          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.954e-24
Identity = 53/140 (37.86%), Postives = 81/140 (57.86%), Query Frame = -3
Query:  267 LKDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 644
            L+ L KD P    AGP +E+ +F W   I GPPD+PYA GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ ++ ++E
Sbjct:   13 LQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_XENTR (Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropicalis GN=ube2s PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.686e-24
Identity = 55/136 (40.44%), Postives = 77/136 (56.62%), Query Frame = -3
Query:  228 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 635
            L  DPP      P  ED+   Q  I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A G
Sbjct:   23 LTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSTNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHAQG 158          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  243 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQ 635
            L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y A AR  T+
Sbjct:   23 LTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.426e-24
Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  243 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQ 635
            L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+ +NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y A AR  T+
Sbjct:   23 LTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.699e-24
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = -3
Query:  240 KDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 641
            K L  +PP    AGP+ E+  F W+A IMGP D+ +  GVF   + FP DYP  PPK+ F  ++FHPNI  +G +C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     + + M++ D+ ++   A+   QK
Sbjct:   14 KQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQK 161          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = -3
Query:  243 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQ 635
            L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y A AR  T+
Sbjct:   23 LTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/134 (41.04%), Postives = 77/134 (57.46%), Query Frame = -3
Query:  234 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 635
            L  DPP      P  ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR  T+ +A
Sbjct:   23 LTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 55/131 (41.98%), Postives = 73/131 (55.73%), Query Frame = -3
Query:  243 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQ 635
            L  DPP      P  ED+   Q TI GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN+  NG IC+++LK  W+  L I  VLL+I  LL  PNP+  L  E   +   +  +Y A AR  T+
Sbjct:   23 LTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
The following BLAST results are available for this feature:
BLAST of CF832747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UB2L3_BOVIN1.496e-2440.68Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2G1_MACFA1.496e-2437.50Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBC7_YEAST1.954e-2437.86Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2S_XENTR5.686e-2440.44Ubiquitin-conjugating enzyme E2 S OS=Xenopus tropi... [more]
UBE2S_HUMAN7.426e-2441.98Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBE2S_BOVIN7.426e-2441.98Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UB2G2_BOVIN9.699e-2436.49Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2S_RAT1.267e-2341.98Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_RANCA1.267e-2341.04Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2S_MOUSE1.267e-2341.98Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832747 ID=CF832747; Name=CF832747; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTCTAGTGAAATAAACTACATTGAATGATAGGAGTTTCAAA
CAAGAAACATTCAACATTAACAAAAACGTCTTGCCCTTGCAACTCCTCCC
CAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCA
AGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGT
TCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCC
AGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGA
GCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGA
GCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTT
CTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGGGTGG
AAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCCGG
AGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAG
GGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACCGGA
CCGGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTT
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