CF832747

Overview
NameCF832747
Unique NameCF832747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.813e-23
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = -3
Query:  255 LKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-------------EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 644
            LK++QK+PP   S G V +  +F W+  I+GP D+ Y GG F  T+ FP DYP  PPK+ F T+++HPN++ NG +C+ IL              E+W P  +   +L+S+ S+L+ PN + P   + A  ++ +  +++   R
Sbjct:   14 LKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVR 157          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = -3
Query:  267 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 644
            L+ L        +A P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ S++ +Y+
Sbjct:   39 LRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = -3
Query:  228 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 635
            L  DPP      P  ED+   Q  I GP  +PYA G+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + A+  T+ +A G
Sbjct:   23 LTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQG 158          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.401e-22
Identity = 55/147 (37.41%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  240 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKSDKAKYEATARSWTQK 641
            K+L  +P          +++  W   + GPPD+ Y GG+F   I FPP YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y    +   +K
Sbjct:   11 KNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKK 157          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.401e-22
Identity = 50/148 (33.78%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  240 KDLQKDPPTSCSAGPVAED-MFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 641
            K+L ++ P   +AGP  ED  F W   I GP  +P+ GG++  T+ FP DYP  PP + F  + FHPN+  +G++C+ IL              E+WSP  ++ K+LLS+ S+L +PN +     +   M++ D+ +Y    R   +K
Sbjct:   15 KELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.829e-22
Identity = 53/136 (38.97%), Postives = 73/136 (53.68%), Query Frame = -3
Query:  228 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 635
            L  DPP      P  ED+     +I GP  +PYAGGVF + +    D+P  PP+  F TK+FHPN+   G IC+++LK  W   L +  VLL+I  LL  PNP+  L  E   +   D  +Y + A   T+ +AMG
Sbjct:   23 LAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.389e-22
Identity = 48/127 (37.80%), Postives = 77/127 (60.63%), Query Frame = -3
Query:  267 LKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 644
            L  L        SA P ++ ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   37 LMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = -3
Query:  267 LKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 644
            LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++
Sbjct:   13 LKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFK 152          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.075e-22
Identity = 52/140 (37.14%), Postives = 79/140 (56.43%), Query Frame = -3
Query:  267 LKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 644
            LKDL K P    SAG V E ++F W  TI+GPPD+ Y GG F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++
Sbjct:   13 LKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFK 152          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.322e-22
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = -3
Query:  237 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 608
            SA P  E++F W  TI GP ++ Y+G  + +++ FP  YP+  P V F T  FHPN++  G+ICLDILK++WS    +  +LLSI SLL +PN + PL  + A M+ +D+ +Y+    ++ +K+
Sbjct:   53 SAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW-NDQKEYKKYLDAFYEKH 175          
The following BLAST results are available for this feature:
BLAST of CF832747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC15_SCHPO4.813e-2334.72Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBE2C_SPISO1.072e-2240.48Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UB2SC_XENLA1.072e-2238.97Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC_ASFM21.401e-2237.41Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC7_SCHPO1.401e-2233.78Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBE2S_DANRE1.829e-2238.97Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC11_SCHPO2.389e-2237.80Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC7_ARATH4.075e-2237.86Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH4.075e-2237.14Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2C_DROME5.322e-2240.32Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832747 ID=CF832747; Name=CF832747; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTCTAGTGAAATAAACTACATTGAATGATAGGAGTTTCAAA
CAAGAAACATTCAACATTAACAAAAACGTCTTGCCCTTGCAACTCCTCCC
CAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCA
AGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGT
TCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCC
AGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGA
GCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGA
GCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTT
CTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGGGTGG
AAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCCGG
AGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAG
GGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACCGGA
CCGGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTT
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