CF832747

Overview
NameCF832747
Unique NameCF832747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.959e-16
Identity = 46/139 (33.09%), Postives = 80/139 (57.55%), Query Frame = -3
Query:  231 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 638
            DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   ++W+   T+S +LL++  +L++P  ++P+  E A +   D++ Y    + + +   M
Sbjct:   15 DLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLYRTILKLFNRPLQM 153          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2F_XENTR (NEDD8-conjugating enzyme UBE2F OS=Xenopus tropicalis GN=ube2f PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = -3
Query:  234 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 638
            +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK +Y      + ++YA
Sbjct:   43 ELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = -3
Query:  234 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 638
            +L+ + P +C       +  H+    + P +S Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK +Y      + ++YA
Sbjct:   43 ELEANLPCTCKVNFPDPNKLHYFHLTVSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKRYA 184          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.699e-16
Identity = 45/143 (31.47%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  231 LKDLQKDPP----TSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 644
            L+DLQK+ P      CS     +++  W A ++ P   PY    F + I FP +YPF+PP V F T+++HPN++ +G +CL I+ K+ W  +    +VL ++  L+  P P  P+  E+A     D   ++  A+ +T ++ +
Sbjct:   11 LEDLQKELPKYLRNLCSE---EDNVLVWHALLL-PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQFGV 149          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = -3
Query:  231 EDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 590
            +D+  W+    GP  +PY  G +L  I F  +YP   P + F T + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YEA    +  K+A+
Sbjct: 1160 QDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.721e-16
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = -3
Query:  267 DMFHWQATIMG-PPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 587
            ++F W   +M    DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +  +Y+
Sbjct:   38 NIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYK 157          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = -3
Query:  255 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 563
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +    + ++    R
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.694e-15
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = -3
Query:  252 PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARS 599
            P+  ++ H +   + P +  Y GG F   I    +YP  PPKV    K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   PN +DPL  E A     D   + +  R+
Sbjct:   48 PIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 48/143 (33.57%), Postives = 72/143 (50.35%), Query Frame = -3
Query:  234 DLQKDPPTSCSAG-PVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 638
            +L+ + P +C    P    + ++Q T++ P +  Y GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   43 ELEANLPCTCKVNFPDPNKLHYFQLTVI-PDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.825e-15
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = -3
Query:  339 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 644
            L + Q +PPT      V +++  W   ++G P + YA   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct:   24 LVEWQMNPPTGFKH-KVTDNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125          
The following BLAST results are available for this feature:
BLAST of CF832747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBE2U_MACFA1.959e-1633.09Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBE2F_XENTR5.699e-1633.80NEDD8-conjugating enzyme UBE2F OS=Xenopus tropical... [more]
UBE2F_XENLA5.699e-1633.80NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UB2L6_BOVIN5.699e-1631.47Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC4_MIMIV7.443e-1634.17Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC3_YEAST9.721e-1635.83Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC12_YEAST2.166e-1535.92NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_SCHPO3.694e-1532.76NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2F_CHICK4.825e-1533.57NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]
UBC16_ARATH4.825e-1538.83Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832747 ID=CF832747; Name=CF832747; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTCTAGTGAAATAAACTACATTGAATGATAGGAGTTTCAAA
CAAGAAACATTCAACATTAACAAAAACGTCTTGCCCTTGCAACTCCTCCC
CAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCA
AGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGT
TCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCC
AGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGA
GCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGA
GCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTT
CTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGGGTGG
AAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCCGG
AGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAG
GGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACCGGA
CCGGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTT
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