CF832747

Overview
NameCF832747
Unique NameCF832747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.703e-13
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = -3
Query:  339 LQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 635
            LQ DPP   +     V   +  W   + G P + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:   15 LQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.823e-12
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = -3
Query:  339 LQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 635
            LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF+ P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:   15 LQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.993e-12
Identity = 44/136 (32.35%), Postives = 64/136 (47.06%), Query Frame = -3
Query:  237 PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKY 623
            P TSC          H     + P +  Y GG F   I  PP+Y   PP V   TKV+HPNIN +GSICL IL++       W P   ++ V+  + SL  D  + +D L  + A M+  ++  +    R +  +Y
Sbjct:   53 PSTSC---------LHELELTVTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISRY 179          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = -3
Query:  339 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 641
            K + ++PP    A P  E++  W   I GPPD+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:   15 KMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = -3
Query:  330 LKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 644
            +K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T PN
Sbjct:   20 VKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC17_CAEEL (Probable ubiquitin-conjugating enzyme protein 17 OS=Caenorhabditis elegans GN=ubc-17 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = -3
Query:  354 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK-----VFHPNINSNGSICLDIL-------KEQWSPALTISKVLLSI 563
            I GP D+PYA G+F   I FP  YPF PPK AF T       F+PN+ ++G ICL IL       +E+W+P  ++ +VL+SI
Sbjct:  449 ISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = -3
Query:  342 KDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 629
            KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   23 KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = -3
Query:  342 KDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 629
            KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   23 KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 34/106 (32.08%), Postives = 53/106 (50.00%), Query Frame = -3
Query:  327 LQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 635
            L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:   17 LCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 120          
BLAST of CF832747 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.227e-11
Identity = 34/104 (32.69%), Postives = 52/104 (50.00%), Query Frame = -3
Query:  339 KDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 641
            K++  +PP    A P  +++  W   I GPP +PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:   15 KNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
The following BLAST results are available for this feature:
BLAST of CF832747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBE2W_HUMAN7.703e-1339.81Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2W_DANRE3.823e-1238.83Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC12_CAEEL4.993e-1232.35NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBC6_CANGA6.521e-1233.65Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC32_ARATH6.521e-1233.03Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
UBC17_CAEEL8.516e-1245.12Probable ubiquitin-conjugating enzyme protein 17 O... [more]
UB2J1_MOUSE1.897e-1136.36Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN1.897e-1136.36Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UBC34_ARATH3.236e-1132.08Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC6_KLULA4.227e-1132.69Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832747 ID=CF832747; Name=CF832747; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTTTTTTCTAGTGAAATAAACTACATTGAATGATAGGAGTTTCAAA
CAAGAAACATTCAACATTAACAAAAACGTCTTGCCCTTGCAACTCCTCCC
CAAACATCCTTCCTCATTACTAAAATACAAAACATCCCCTTCCCGAAGCA
AGATTGAAGAAAAAGGAGAAAAAAACACAACATATTTCATATAAATGAGT
TCCATTTCTGCAATATCCAAACAACTATCCCATGGCATACTTCTGTGTCC
AGCTCCTGGCAGTGGCTTCATATTTGGCCTTGTCGGACTTGTACATGTGA
GCAATCTCCGGTACAAGCGGGTCGTCAGGATTTGGGTCAGTAAGCAACGA
GCAGATAGAAAGCAGGACCTTTGAAATGGTAAGAGCTGGGCTCCACTGTT
CTTTAAGGATATCAAGACATATGCTTCCATTGCTGTTGATGTTTGGGTGG
AAGACCTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAGGGATAATCCGG
AGGAAAATGAATGGTAACCAAAAATACACCTCCTGCATATGGACTATCAG
GGGGGCCCATAATTGTTGCTTGCCAGTGGAACATGTCTTCAGCCACCGGA
CCGGCGCTGCAAGACGTGGGAGGATCCTTCTGCAAATCCTTGAGTT
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