CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 7.981e-35
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   69 VHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 7.981e-35
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   74 VHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.042e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 VHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.042e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 VHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.361e-34
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   72 VHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.361e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   69 VHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.778e-34
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   64 VHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   63 VHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 VHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.322e-34
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 VHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B7_ARATH7.981e-3596.10Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH7.981e-3596.10Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B11_ORYSJ1.042e-3496.10Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI1.042e-3496.10Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_MEDTR1.361e-3496.10Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B10_ARATH1.361e-3496.10Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_SOLLC1.778e-3496.10Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B4_ARATH2.322e-3494.74Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_ORYSJ2.322e-3494.81Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI2.322e-3494.81Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
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